DRSC/TRiP Functional Genomics Resources

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Protein Alignment loco and si:ch211-117l17.6

DIOPT Version :10

Sequence 1:NP_732773.1 Gene:loco / 42672 FlyBaseID:FBgn0020278 Length:1541 Species:Drosophila melanogaster
Sequence 2:XP_001923588.6 Gene:si:ch211-117l17.6 / 100151245 ZFINID:ZDB-GENE-110914-213 Length:193 Species:Danio rerio


Alignment Length:162 Identity:48/162 - (29%)
Similarity:80/162 - (49%) Gaps:6/162 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   782 RSQHQLSLLQVPKVLTTPAPPSAITASVAAEGAAQDHGCPSSWAGSFERMLQDAAGMQTFSEFLK 846
            |:::|...|.|  :|:.....|.|...:..:.....|............:|::...:..|..||:
Zfish    27 RNKNQTKTLDV--LLSRKKQKSNIRCVLTQKKTEVSHSPLQDHRQKLADLLENTDYLAAFQSFLQ 89

  Fly   847 KEFSAENIYFWTACERYRLLESEADRVAQAREIFAKHLANNSSDPVNVDSQARSLTEEKLADAAP 911
            .|||||||.||.||..|:.:.|.....::|.||:...|.:.:...||:|...|.  |.|.:.|.|
Zfish    90 SEFSAENIEFWLACREYKQIRSTGKLSSKAAEIYKTFLHSTAQKEVNIDHCTRE--EIKRSLAKP 152

  Fly   912 DI--FAPAQKQIFSLMKFDSYQRFIRSDLYKS 941
            |:  |..|:|.::.||:.||..||::|:.:::
Zfish   153 DLGCFDKAEKLVYRLMEEDSCPRFLKSEAFQN 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
locoNP_732773.1 PDZ_RGS12-like 70..145 CDD:467194
PTB_RGS12 251..391 CDD:269984
RGS_R12-like 828..941 CDD:188661 40/114 (35%)
RBD1_RGS12_like 1072..1141 CDD:340515
RBD2_RGS12_like 1142..1212 CDD:340587
GoLoco 1354..1375 CDD:214645
si:ch211-117l17.6XP_001923588.6 None
Blue background indicates that the domain is not in the aligned region.

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