DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and AT1G04880

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_171980.1 Gene:AT1G04880 / 839388 AraportID:AT1G04880 Length:448 Species:Arabidopsis thaliana


Alignment Length:76 Identity:20/76 - (26%)
Similarity:37/76 - (48%) Gaps:13/76 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PKKPMSAFMLWMNSTGRKH--IKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQ-------ESAT 63
            ||...|.:..:.   ..:|  :|..||. ..:::|...||:|..:.:::|:::|       |...
plant   263 PKPNRSGYNFFF---AEQHARLKPLHPG-KDRDISRMIGELWNKLNEDEKLIYQGKAMEDKERYR 323

  Fly    64 TAMAEYKEKLK 74
            |.|.:|:||.|
plant   324 TEMEDYREKKK 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 20/76 (26%)
AT1G04880NP_171980.1 ARID_HMGB9-like 31..116 CDD:350636
HMG-box_AtHMGB9-like 263..329 CDD:438825 16/69 (23%)
Blue background indicates that the domain is not in the aligned region.

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