DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tHMG1 and Tfam

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_112616.2 Gene:Tfam / 83474 RGDID:620682 Length:244 Species:Rattus norvegicus


Alignment Length:79 Identity:27/79 - (34%)
Similarity:42/79 - (53%) Gaps:8/79 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDCGARPKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATT-- 64
            |..|..||||||:::.:......| .||:|||..|.|:..|...|||.:.:.:|.|::.....  
  Rat    43 SSLGNYPKKPMSSYLRFSTEQLPK-FKAKHPDAKVSELIRKIAAMWRELPEAEKKVYEADFKAEW 106

  Fly    65 -----AMAEYKEKL 73
                 |:::|||:|
  Rat   107 KVYKEAVSKYKEQL 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 25/73 (34%)
TfamNP_112616.2 HMG_box 49..116 CDD:459837 21/67 (31%)
HMG-box_SF 134..232 CDD:469606
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 221..244
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.