DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and AT3G13350

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_566454.1 Gene:AT3G13350 / 820535 AraportID:AT3G13350 Length:319 Species:Arabidopsis thaliana


Alignment Length:25 Identity:9/25 - (36%)
Similarity:12/25 - (48%) Gaps:0/25 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 CAAETVQGNRLLRPRLYRCPANQMF 38
            |.|.||....:.|..:.|..|||.:
plant   311 CEAITVLLTWIERGEVNRRSANQFY 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 9/25 (36%)
AT3G13350NP_566454.1 ARID_HMGB9-like 42..127 CDD:350636
HMG-box_AtHMGB9-like 238..304 CDD:438825
Blue background indicates that the domain is not in the aligned region.

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