DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and hmgb1b

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001092721.2 Gene:hmgb1b / 795095 ZFINID:ZDB-GENE-030131-8480 Length:197 Species:Danio rerio


Alignment Length:90 Identity:27/90 - (30%)
Similarity:48/90 - (53%) Gaps:9/90 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GARPKKP---MSAFMLWMNSTGRKHIKAEHPDFSV--QEVSVKGGEMWRAMADEDKIVWQESATT 64
            |..|:||   ||::..::.:...:| |.:||:.||  .|.|.|..|.|:.|:.::|..:::.|..
Zfish     2 GKDPRKPRGKMSSYAYFVQTCREEH-KKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKQ 65

  Fly    65 AMAEYKEKLKQWNFP---KEHRFSD 86
            ....|:.::|.:..|   |:.||.|
Zfish    66 DKVRYEREMKNYIPPKGEKKKRFKD 90

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 21/72 (29%)
hmgb1bNP_001092721.2 HMG-box_HMGB_rpt1 7..75 CDD:438794 19/68 (28%)
HMG-box_HMGB_rpt2 92..162 CDD:438795
Blue background indicates that the domain is not in the aligned region.

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