DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and tox

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001243623.1 Gene:tox / 569666 ZFINID:ZDB-GENE-070912-181 Length:540 Species:Danio rerio


Alignment Length:66 Identity:23/66 - (34%)
Similarity:39/66 - (59%) Gaps:1/66 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKEK 72
            |:||:||:.|:...| :..||.::|:.:..|||.....||..:.:|.|.|:::...||..||.::
Zfish   289 PQKPVSAYALFFRDT-QAAIKGQNPNATFGEVSKIVASMWDGLGEEQKQVYKKKTETAKKEYLKQ 352

  Fly    73 L 73
            |
Zfish   353 L 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 23/66 (35%)
toxNP_001243623.1 HMG-box_TOX-like 290..359 CDD:438811 22/65 (34%)

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