DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and sox14

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001032769.1 Gene:sox14 / 557661 ZFINID:ZDB-GENE-051113-268 Length:238 Species:Danio rerio


Alignment Length:85 Identity:23/85 - (27%)
Similarity:42/85 - (49%) Gaps:10/85 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAE----- 68
            |:||:|||:|.....|| :..|:|.....|:|.:.|..|:.:::.:|..:.:.|....|:     
Zfish     9 KRPMNAFMVWSRGQRRK-MAQENPKMHNSEISKRLGAEWKLLSESEKRPYIDEAKRLRAQHMKEH 72

  Fly    69 ----YKEKLKQWNFPKEHRF 84
                |:.:.|..|..|:.|:
Zfish    73 PDYKYRPRRKPKNLLKKDRY 92

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 20/75 (27%)
sox14NP_001032769.1 HMG-box_SoxB 6..85 CDD:438790 20/76 (26%)
SOXp 77..>95 CDD:463537 5/16 (31%)

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