DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and tox3

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:XP_005169075.1 Gene:tox3 / 555286 ZFINID:ZDB-GENE-090312-209 Length:587 Species:Danio rerio


Alignment Length:85 Identity:25/85 - (29%)
Similarity:39/85 - (45%) Gaps:15/85 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 DCGARPK--------------KPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADE 53
            |.|.:||              ||:||:.|:...| :..||.::|:.:..|||.....||..:.:|
Zfish   245 DAGKKPKTPKKKKKKDPNEPQKPVSAYALFFRDT-QAAIKGQNPNATFGEVSKIVASMWDGLGEE 308

  Fly    54 DKIVWQESATTAMAEYKEKL 73
            .|.|::.....|..||.:.|
Zfish   309 QKQVYKSKTEAAKKEYLKAL 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 23/80 (29%)
tox3XP_005169075.1 HMG-box_TOX-like 265..334 CDD:438811 21/65 (32%)

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