DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and hmg20b

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:XP_017947143.1 Gene:hmg20b / 394538 XenbaseID:XB-GENE-5809048 Length:327 Species:Xenopus tropicalis


Alignment Length:90 Identity:20/90 - (22%)
Similarity:45/90 - (50%) Gaps:7/90 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKEK 72
            ||.|::.::.::|.. |:.|:|:|||....|::...|..|..:...:|..:.:.|.....:|.::
 Frog    68 PKAPVTGYVRFLNER-REQIRAQHPDLPFPEITKMLGAEWSTLPPHEKQRYLDEAERDKQQYMKE 131

  Fly    73 LKQWNFPKEHRFSDTQCICSSNTNQ 97
            |      :|::.|:...:|:....:
 Frog   132 L------REYQQSEAYKMCAEKIQE 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 17/67 (25%)
hmg20bXP_017947143.1 HMG-box_HMG20B 67..145 CDD:438834 19/83 (23%)

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