DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and HmgD

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_726109.1 Gene:HmgD / 37481 FlyBaseID:FBgn0004362 Length:112 Species:Drosophila melanogaster


Alignment Length:76 Identity:35/76 - (46%)
Similarity:51/76 - (67%) Gaps:6/76 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDCGARPKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTA 65
            |||   :||:|:||:|||:|| .|:.||.|:|...|.||:.:|||:||||  :||..|:..|..|
  Fly     1 MSD---KPKRPLSAYMLWLNS-ARESIKRENPGIKVTEVAKRGGELWRAM--KDKSEWEAKAAKA 59

  Fly    66 MAEYKEKLKQW 76
            ..:|...:|::
  Fly    60 KDDYDRAVKEF 70

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 32/67 (48%)
HmgDNP_726109.1 HMG-box_SSRP1-like 7..71 CDD:438810 30/67 (45%)

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