DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tHMG1 and ubtf

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001005395.1 Gene:ubtf / 368509 ZFINID:ZDB-GENE-030616-252 Length:735 Species:Danio rerio


Alignment Length:75 Identity:19/75 - (25%)
Similarity:40/75 - (53%) Gaps:3/75 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKEK 72
            |:|..:...||.:...:..:|| |||.:.:::....|:.|..::|:.:|.|...:......|:||
Zfish   189 PEKAKTPQQLWYSHEKKAFLKA-HPDATTKDIKDNLGKQWPQLSDKKRIKWIAKSLEQHKLYEEK 252

  Fly    73 LKQWNFPKEH 82
            :::  |.::|
Zfish   253 MRE--FIQQH 260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 17/67 (25%)
ubtfNP_001005395.1 HMG-box_UBF1_rpt1-like 101..177 CDD:438814
HMG-box_UBF1_rpt2 189..262 CDD:438815 19/75 (25%)
HMG-box_UBF1_rpt3 290..372 CDD:438816
HMG-box_UBF1_rpt4 398..463 CDD:438817
HMG-box_SF 469..552 CDD:469606
HMG-box_UBF1_rpt6-like 555..640 CDD:438819
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.