DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and Hmg20a

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:XP_006243179.1 Gene:Hmg20a / 315689 RGDID:1564760 Length:350 Species:Rattus norvegicus


Alignment Length:69 Identity:17/69 - (24%)
Similarity:37/69 - (53%) Gaps:1/69 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKEK 72
            ||.|::.::.:||.. |:.::|:.|:....|::...|..|..:..|:|..:.:.|......|.::
  Rat   106 PKSPLTGYVRFMNER-REQLRAKRPEVPFPEITRMLGNEWSKLPPEEKQRYLDEADRDKERYMKE 169

  Fly    73 LKQW 76
            |:|:
  Rat   170 LEQY 173

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 16/67 (24%)
Hmg20aXP_006243179.1 DUF5401 <80..316 CDD:375164 17/69 (25%)
HMG-box_HMG20A 86..189 CDD:438833 17/69 (25%)

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