DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and HMGB3

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001427702.1 Gene:HMGB3 / 3149 HGNCID:5004 Length:222 Species:Homo sapiens


Alignment Length:68 Identity:25/68 - (36%)
Similarity:38/68 - (55%) Gaps:5/68 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKEK 72
            ||:|.|.|.|:. |..|..||:.:|..|:.:|:.|.||||..:.|.:|    :...|..|:.|||
Human   115 PKRPPSGFFLFC-SEFRPKIKSTNPGISIGDVAKKLGEMWNNLNDSEK----QPYITKAAKLKEK 174

  Fly    73 LKQ 75
            .::
Human   175 YEK 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 25/68 (37%)
HMGB3NP_001427702.1 None

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