DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and Sox8

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001100459.1 Gene:Sox8 / 302993 RGDID:1309072 Length:463 Species:Rattus norvegicus


Alignment Length:82 Identity:23/82 - (28%)
Similarity:44/82 - (53%) Gaps:3/82 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ARP--KKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAE 68
            |:|  |:||:|||:|..:..|| :..::|.....|:|...|::||.:::.:|..:.|.|.....:
  Rat    95 AKPHVKRPMNAFMVWAQAARRK-LADQYPHLHNAELSKTLGKLWRLLSESEKRPFVEEAERLRVQ 158

  Fly    69 YKEKLKQWNFPKEHRFS 85
            :|:....:.:....|.|
  Rat   159 HKKDHPDYKYQPRRRKS 175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 20/69 (29%)
Sox8NP_001100459.1 Sox_N 18..86 CDD:463586
HMG-box_SoxE 98..172 CDD:438840 19/74 (26%)
Blue background indicates that the domain is not in the aligned region.

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