DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tHMG1 and hmg-6

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_493451.2 Gene:hmg-6 / 185946 WormBaseID:WBGene00009827 Length:128 Species:Caenorhabditis elegans


Alignment Length:69 Identity:16/69 - (23%)
Similarity:35/69 - (50%) Gaps:8/69 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 SAFMLWMNSTGRKHI-KAEHPDFSVQEVSVKGGEMWRAMADEDKIVW----QESATTAMAE-YKE 71
            ||:.|:...  |:.: |...|..:..::|.|....|.::.:|:|..:    :::..|::|. .:|
 Worm    54 SAYALFFRE--RQSLEKRAAPYATFGQISQKIARQWDSLTEEEKKAYKQRCEKNRKTSIANAVEE 116

  Fly    72 KLKQ 75
            |.:|
 Worm   117 KARQ 120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 16/69 (23%)
hmg-6NP_493451.2 HMG-box_SF 54..107 CDD:469606 11/54 (20%)

Return to query results.
Submit another query.