DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and gei-3

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001076772.1 Gene:gei-3 / 184597 WormBaseID:WBGene00001560 Length:1405 Species:Caenorhabditis elegans


Alignment Length:133 Identity:31/133 - (23%)
Similarity:56/133 - (42%) Gaps:37/133 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 KKPMSAFMLWMNSTGRKH---IKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYK 70
            ::||:|||::    .::|   :..::|:...:.||...||.|.::|.:.|..:.:.||.....:.
 Worm   844 RRPMNAFMIF----SKRHRPLVHQQYPNKDNRTVSKILGEWWYSLAADQKAEYHKLATQVKEAHF 904

  Fly    71 EKLKQWNF-PKEHRFSDTQCICSSNTNQCPT--------LFVYD--TMDD-------------SM 111
            :....|.: .||.:      |.|.:.|..|.        :|.:|  |.||             .|
 Worm   905 KAHPDWKWSTKEKK------IKSESLNTTPVALTPLKNKVFDFDIRTSDDLAKSFVDGTALLSPM 963

  Fly   112 TPI 114
            ||:
 Worm   964 TPM 966

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 16/69 (23%)
gei-3NP_001076772.1 DUF4819 194..275 CDD:465014
HMG-box_CIC-like 842..918 CDD:438806 19/77 (25%)
Blue background indicates that the domain is not in the aligned region.

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