DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and sox-4

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_001335567.1 Gene:sox-4 / 182547 WormBaseID:WBGene00015716 Length:260 Species:Caenorhabditis elegans


Alignment Length:63 Identity:21/63 - (33%)
Similarity:33/63 - (52%) Gaps:1/63 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 RPKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEY 69
            |.|:||:|||:| :...|:.|.|....|...::|...|..||.|.:.:|:.:.|.|.....|:
 Worm   120 RIKRPMNAFMVW-SQQRRQQIAATGQKFHNSDISKMLGAEWRKMEEHEKVPFVERAKQLREEH 181

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 20/62 (32%)
sox-4NP_001335567.1 HMG-box_SOX 120..194 CDD:438820 21/63 (33%)

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