DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and LOC108349258

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:XP_017457896.2 Gene:LOC108349258 / 108349258 RGDID:11417756 Length:168 Species:Rattus norvegicus


Alignment Length:65 Identity:23/65 - (35%)
Similarity:41/65 - (63%) Gaps:1/65 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKEK 72
            |:||.|:|:|: :....:.||.:||:::|.:|:...|.||...::.|||.::|.|....|:|.|:
  Rat    93 PRKPPSSFLLF-SQDHFEEIKEQHPNWTVAQVAKAAGRMWARCSEADKIPYEERAAVLRAKYLEE 156

  Fly    73  72
              Rat   157  156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 23/65 (35%)
LOC108349258XP_017457896.2 HMG-box_SF 8..76 CDD:469606
HMG-box_HMGB_rpt2 95..161 CDD:438795 22/63 (35%)
Blue background indicates that the domain is not in the aligned region.

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