DRSC/TRiP Functional Genomics Resources

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Protein Alignment tHMG1 and Hmgb1l2

DIOPT Version :10

Sequence 1:NP_651055.1 Gene:tHMG1 / 42650 FlyBaseID:FBgn0038978 Length:126 Species:Drosophila melanogaster
Sequence 2:XP_038956208.1 Gene:Hmgb1l2 / 108349189 RGDID:11468204 Length:213 Species:Rattus norvegicus


Alignment Length:68 Identity:29/68 - (42%)
Similarity:41/68 - (60%) Gaps:5/68 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 PKKPMSAFMLWMNSTGRKHIKAEHPDFSVQEVSVKGGEMWRAMADEDKIVWQESATTAMAEYKEK 72
            ||:|.|||.|:. |..|..||.|||..|:.:|:.|.||||...|.:||..:::.|    |:.|||
  Rat    95 PKRPPSAFFLFC-SEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKA----AKLKEK 154

  Fly    73 LKQ 75
            .::
  Rat   155 YEK 157

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tHMG1NP_651055.1 HMG_box 8..76 CDD:459837 29/68 (43%)
Hmgb1l2XP_038956208.1 HMG-box_HMGB_rpt1 8..76 CDD:438794
HMG-box_HMGB_rpt2 93..163 CDD:438795 29/68 (43%)
Blue background indicates that the domain is not in the aligned region.

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