DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CCT1 and tcp1

DIOPT Version :9

Sequence 1:NP_524450.2 Gene:CCT1 / 42649 FlyBaseID:FBgn0003676 Length:557 Species:Drosophila melanogaster
Sequence 2:XP_002933907.1 Gene:tcp1 / 100487607 XenbaseID:XB-GENE-939843 Length:555 Species:Xenopus tropicalis


Alignment Length:554 Identity:408/554 - (73%)
Similarity:476/554 - (85%) Gaps:1/554 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LASPLSIAGTRQSGASVRTQNVMAALSISNIVKSSLGPVGLDKMLVDDIGDVTVTNDGATILRLL 68
            :..||::.|.|.:|.:||:||||||.||:||||||||||||||||||||||||:||||||||:||
 Frog     1 MEGPLAVFGERSTGEAVRSQNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLL 65

  Fly    69 EVEHPAAKVLVELAQLQDEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRIACKEACK 133
            ||||||||||.|||.|||.|||||||||||:||||||||||||||||||||:|.|||:|||||.:
 Frog    66 EVEHPAAKVLCELADLQDNEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVIGGYRLACKEAVR 130

  Fly   134 YISEHLTAPVDELGRDSLINIAKTSMSSKIIGADAEFFSAMVVDAAQSVKITDPRGQAAYSIKAI 198
            ||:|:||...||||::.|:|.|:|||||||||.|::||||||||||.:||..||:|||.|.|.:|
 Frog   131 YINENLTINTDELGKECLLNAARTSMSSKIIGVDSDFFSAMVVDAALAVKYVDPKGQARYPINSI 195

  Fly   199 NVLKAHGKSARESVLIPGYALNCTIASQQMPKKIVNAKIACLDFSLQKTKMKMGVQVLINDPDKL 263
            |||||||:|.:||:|:.||||||.:.||.|.|:|||||||||||||||||||:||||:|:||.||
 Frog   196 NVLKAHGRSQKESILVNGYALNCVVGSQSMNKRIVNAKIACLDFSLQKTKMKLGVQVIISDPTKL 260

  Fly   264 EAIRARELDITKERINMILGTGVNVVLVSGGVDDLCMKYFVEAGAMAVRRVKKSDLKIIAKATGA 328
            :.||.||.|||||||..||.||.||:|.:||:||:|:||||:|||||||||.|.|||.|||||||
 Frog   261 DQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVDAGAMAVRRVLKKDLKRIAKATGA 325

  Fly   329 AFITSLTNMDGEESFDASMVGEAAEVAQERICDDELILIKGTKARAAASIILRGPNDFYCDEMER 393
            ...::|.|::|||||:|||:|:|.||.|||||||||||:|.||||..|||||||.|||.||||||
 Frog   326 IMCSTLANLEGEESFEASMLGQAEEVVQERICDDELILVKNTKARTCASIILRGANDFMCDEMER 390

  Fly   394 SVHDALCVVKRVLESKKVVAGGGCVEAALSIYLENFATSLASREQLAIAEFAKSLLVIPKTLSVN 458
            ||||||||||||||||.||.|||.|||||||||||:|||:.|||||||||||::||||||||:||
 Frog   391 SVHDALCVVKRVLESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARALLVIPKTLAVN 455

  Fly   459 AAKDATDLVAKLRSYHNSSQTKPERSDLKWTGLDLIEGVVRDNKKAGVLEPAMSKIKSLKFATEA 523
            ||:|:||||||||::||.:|..|||.:|||.||||:.|..||||:|||.||.:.|.|||||||||
 Frog   456 AAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLLNGKPRDNKQAGVFEPTLVKTKSLKFATEA 520

  Fly   524 AITILRIDDMIKLNPEDKSGK-SYADACAAGELD 556
            |||||||||:|||:||.|..| .|.:|..:|.::
 Frog   521 AITILRIDDLIKLHPEAKEEKGKYHEAVQSGSIE 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CCT1NP_524450.2 TCP1_alpha 12..538 CDD:239451 399/525 (76%)
tcp1XP_002933907.1 TCP1_alpha 9..535 CDD:239451 399/525 (76%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 767 1.000 Domainoid score I89
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H5656
Inparanoid 1 1.050 805 1.000 Inparanoid score I485
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D205390at33208
OrthoFinder 1 1.000 - - FOG0005251
OrthoInspector 1 1.000 - - oto104905
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3773
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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