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Protein Alignment CG13855 and Iqub

DIOPT Version :9

Sequence 1:	NP_651037.1	Gene:	CG13855 / 42629	FlyBaseID:	FBgn0038960	Length:	706	Species:	Drosophila melanogaster
Sequence 2:	NP_001029302.1	Gene:	Iqub / 296936	RGDID:	4145674	Length:	790	Species:	Rattus norvegicus

Alignment Length:	696	Identity:	200/696 - (28%)
Similarity:	321/696 - (46%)	Gaps:	84/696 - (12%)

- Green bases have known domain annotations that are detailed below.

  Fly    35 DSRSTESEPQHSEECCVELENVTVKFRLSDSEILAQVYPNCMLLGEIKQDLARKFEVAPEWLVLR 99
            |.||.|.|...    ..:::.:....:.|..|.:|.|.   ::|....|::...|.|...:..|:
  Rat    99 DQRSEEDEMSF----LYKIKAIKENLQSSVKECIATVK---IVLIPAGQEIVMPFRVDAPFRFLK 156

  Fly   100 QDNRILCNSVPL-------------NSTALDEFGIHEFQL-EMNKEGRE-DQTSKLDLDVYYDKH 149
            :....|.. :|.             |:.:|.::|:...:: :||....| ||         |...
  Rat   157 EHFAHLLR-IPHHVLQMAYTGISVGNNESLIQYGVKPREIVQMNVFSSEPDQ---------YPVR 211

  Fly   150 RL------ADFITVHISGDDTQDG--QSKTVVVEIENAAIVKPFLCGYRDQKTGKEYLDAFTQTG 206
            |:      :..|||.|     |.|  :.:.|.|||..:...||||.|:|.:.||.||.:|.|||.
  Rat   212 RIEGLSEGSKIITVTI-----QTGIERYEEVAVEIVKSDFHKPFLGGFRHKITGLEYHNAGTQTV 271

  Fly   207 PYFDKMKYRKYKTRDTQTWEQKEKTLNTAHEQSVQCHLDGINILYVSAANDFTIVPGKYQTFAQK 271
            |.....|...: .|||||..||:|...|.:..|.|....|:   |||...|..:.||.|  |:..
  Rat   272 PKKIPEKDNLF-CRDTQTVFQKKKLQQTMNTTSTQMTKIGV---YVSNMTDKLLTPGSY--FSAA 330

  Fly   272 ERAERKLEKILLIQRNWRRWILWKYI-HLRAQEYRRLVQNREHEDERYEKCVEQ-RMERHRVIKQ 334
            |...|:|..:::||..:|||....|: .||.|:..||...:|.|.::..:..|. ||:.:|  :.
  Rat   331 EYHARRLNAVIVIQTAYRRWHAKCYVDSLRLQKKMRLEWEKEEELKKIREKEEWIRMDYYR--RH 393

  Fly   335 FPRNKDDFDLLYAEVARWKKAELKRITANYEGPARIAEVNILLDKEIQLLNGVERQRNLVYKAME 399
            .|:..:||:||:..:..|::.|:.::........|.|.:..||:||.|::..:.|.|.:.....:
  Rat   394 NPKTTEDFELLFNALELWRQEEVTQVEQYSSEAERKAALCELLEKETQIIASIGRHRYVAQLERQ 458

  Fly   400 DFRKDQLLKEMGKPIEWVGYKDSKIHMDLLSTQRVRFLTEIYK-DLRKPRSKEDRLDFIRQVMAV 463
            |......|.:......|.......:.||...|.|.|.|..||| .|.|..|:::|||.:..:...
  Rat   459 DVATQAFLDKCSASNTWRRPDGQTVEMDTQFTIRARELQSIYKCILLKNLSQDERLDILLTLKHT 523

  Fly   464 LTEETCFPHFPELFDLFDREKNLLLY-AKSFDVEILRKRQTMLFFDLIKFQKGEPK----QRIPS 523
            :.|..| ....|:.:|.|||.:|::. .||.::|.||||.|.||...||.....|:    .::|.
  Rat   524 VKEHEC-KLTQEILELIDREVDLMMRGVKSHNLEGLRKRITTLFIHYIKTPLFNPEVAKHLKVPQ 587

  Fly   524 ---------RMCIVCKKVKTYAEFAIRTRQSHVDTCKHCYYLKLTATENTV--------YQSILR 571
                     ..|..|:......||::......|..|:||..|     ||..        |:.:|:
  Rat   588 DPLKFYDKIYFCHSCQMYLPSVEFSVSPTSHRVYRCRHCINL-----ENETQRRESFLKYKCLLQ 647

  Fly   572 CIHRDERKRKCTTSFAFVMQPDDVRHIIDKIWHGHSALSKTENLSELRLPRWNKSDDWAPWNCIC 636
            .::..|...:..:..|::||..|::::.:.||...||||..::|::|.:.||||..:|:|||||.
  Rat   648 RLYFSEANYEDNSHIAYLMQLQDIKYLTENIWASQSALSAWDDLNDLVMVRWNKHVEWSPWNCIL 712

  Fly   637 LTERETRDHYKIDDIEKVYDPKFVLHIGNLHMLARSLFHTLAAVAT 682
            ||:.|...|.|::.|||.|...|:..|.:.|:||::.|..:..:|:
  Rat   713 LTKDEGTAHLKLESIEKGYGRLFIHKIKHKHILAKNYFSQVPVLAS 758

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.