DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment SKIP and Inppl1

DIOPT Version :10

Sequence 1:NP_001262827.1 Gene:SKIP / 42601 FlyBaseID:FBgn0051163 Length:1080 Species:Drosophila melanogaster
Sequence 2:NP_075233.1 Gene:Inppl1 / 65038 RGDID:68396 Length:1257 Species:Rattus norvegicus


Alignment Length:979 Identity:186/979 - (18%)
Similarity:302/979 - (30%) Gaps:351/979 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VCEWLRALGLAQ-------------YAESFLDNGYDDLEI-------CKQVGDPDLDAIGVEN-- 49
            |..|..:.||.:             |.....:|...|.|.       .|::.|.|...|.:::  
  Rat   443 VTSWFTSKGLGKALDEVTVTIPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLW 507

  Fly    50 ---------PAHRHKL----LKSIR-----SLREKGAASVYFMLNDPNSLSGSMEILCETPPNNE 96
                     |.|.:::    ..|::     :|..|||..|.||.|  .:..|.:.  |.....||
  Rat   508 NIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFN--GTSFGFVN--CHLTSGNE 568

  Fly    97 LELVLREQLETDGVRLTAHPYSTPPSSCLSDKEEDEIYGFGYGV-FAPRVARGGLTQQQQLLQQQ 160
             :...|.|...|.:||.:          |.|:   ::..|...: |......|.|..:..:..|:
  Rat   569 -KTTRRNQNYLDILRLLS----------LGDR---QLSAFDISLRFTHLFWFGDLNYRLDMDIQE 619

  Fly   161 TLQ-------------TQQSIQQQQQQ--MQQQQQQLPIVPG-QQQQGPHQ----HQTLPPNV-- 203
            .|.             .|.::::::.:  ::..::::...|. :.::|...    |:..|..|  
  Rat   620 ILNYISRREFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRT 684

  Fly   204 ----------------AHL-----------------------------NFVQQNCLSPRSAYFY- 222
                            .|:                             .|:.:..||..|...| 
  Rat   685 NVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVTSQFISKKGLSKTSDQAYI 749

  Fly   223 EFPPTAEGRETKKRTTLARLLKGLKTVNRRDRNNQQNGAQARAANDRLRHFQMINGGAGGQQHSF 287
            ||.......:|..||..  .::...|.....:.:.:|.||:                        
  Rat   750 EFESIEAIVKTASRTKF--FIEFYSTCLEEYKKSFENDAQS------------------------ 788

  Fly   288 EETIHRLKVQEAMRKKEKFQREHEEILRDIR----QGLLQMSRGEGRMDDTYMYDEALRTGGGMG 348
            .:.|:.||||.:.|:....    :.||.||.    |.||...:.   ||....|.|.        
  Rat   789 SDNINFLKVQWSSRQLPTL----KPILADIEYLQDQHLLLTVKS---MDGYESYGEC-------- 838

  Fly   349 IAGLGMPLGVGGNGGGGGAAHYAVSALHHQGH------------------WYDEPPYE---SDPD 392
            :..|...:        |..|...::.|.|:|.                  ...|..||   .|.|
  Rat   839 VVALKSMI--------GSTAQQFLTFLSHRGEETGNIRGSMKVRVPTERLGTRERLYEWISIDKD 895

  Fly   393 DFLMAGLNCGPAATIQGGRVRFSNNRESTGVISLRSAGDISL----PQRGPPRRGLIVPQQPPNP 453
            |   .|......:.::|.:...|.:|:.|   |..::..:|.    |::.||      ..:||.|
  Rat   896 D---TGAKSKAPSVLRGSQEHRSGSRKPT---STEASCPLSKLFEEPEKPPP------TGRPPAP 948

  Fly   454 PTIIPLTHARSHDRESGDYAGSISDLQSVTSRFSTVSIGTNNCTARYRTLSGGIGESPSL-SPSP 517
            |..:|        ||           :|:..|..                |.|..|...: :|.|
  Rat   949 PRAVP--------RE-----------ESLNPRLK----------------SEGTPEQEGVAAPPP 978

  Fly   518 SSDYEDIG--VTRG--HGCLP--PSLLAAKAKKNGLPHGKANTICQKATVHHSGEMRSSAKEIGA 576
            .:.:.:..  |..|  |..||  |:..|    :..:|....|.:.........|..|        
  Rat   979 KNSFNNPAYYVLEGVPHQLLPLEPTSFA----RAPIPPTTKNKVAITVPAPQLGRHR-------- 1031

  Fly   577 FNENGRNFVATKDTSRDFSNSQDNTDRGS-----------MSDQA-FACSASSVESLPSASGSST 629
                         |.|....|..:.|.|.           :.|.| |........|:|...|.|.
  Rat  1032 -------------TPRVGEGSSSDEDSGGTLPPPDFPPPPLPDSAIFLPPNLDPLSMPVVRGRSV 1083

  Fly   630 ---------QALVRP-----GSPHSSI-----SAEDRTSMASCICKAKALVD---------SLPN 666
                     :|..||     .||.|:.     ||:||:.....:.|..:.||         .|||
  Rat  1084 GEARGPPPPKAHPRPPLPPGTSPASTFLEEVASADDRSCSVLQMAKTLSEVDYSPGPGRSALLPN 1148

  Fly   667 PYDKEALKFKKGDLIDVLSMNASGIWKGRCHGRVGHFKFINVEVLPEQRMKNSSSKTLAAGSRLA 731
            |.:   |:..:|.               ..:||...|        |..|::.|..:.||..:...
  Rat  1149 PLE---LQLPRGP---------------SDYGRPLSF--------PPPRIRESIQEDLAEEAPCP 1187

  Fly   732 NSGNGSHNGGPCSVEDLLIRIGLKEYTSVFVLNGYEDLELFKELEPADLDYLGILNQEHRAKLLT 796
            ..|..| ..|...:...|..|||:.|....|.||::|||...::...||:..|:.:..|:..||.
  Rat  1188 QGGRAS-GLGEAGMGAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQDPAHKRLLLD 1251

  Fly   797 AVQL 800
            .:||
  Rat  1252 TLQL 1255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SKIPNP_001262827.1 SAM_Samd5 4..65 CDD:188926 16/97 (16%)
SH3 657..710 CDD:473055 11/61 (18%)
SAM_superfamily 742..800 CDD:472832 17/57 (30%)
Inppl1NP_075233.1 SH2_SHIP 17..119 CDD:198206
PHA03247 <103..175 CDD:223021
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 119..181
INPP5c_SHIP2-INPPL1 425..728 CDD:197335 47/302 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 897..986 24/132 (18%)
SH3-binding 945..950 3/4 (75%)
NPXY motif 984..987 0/2 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1004..1115 23/135 (17%)
SAM_Ship2 1193..1255 CDD:188890 19/62 (31%)
Blue background indicates that the domain is not in the aligned region.

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