DRSC/TRiP Functional Genomics Resources

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Protein Alignment SKIP and sash3

DIOPT Version :10

Sequence 1:NP_001262827.1 Gene:SKIP / 42601 FlyBaseID:FBgn0051163 Length:1080 Species:Drosophila melanogaster
Sequence 2:NP_001016498.1 Gene:sash3 / 549252 XenbaseID:XB-GENE-1016821 Length:389 Species:Xenopus tropicalis


Alignment Length:409 Identity:117/409 - (28%)
Similarity:182/409 - (44%) Gaps:96/409 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   518 SSDYEDIGVTRGHGCLPPSLLAAKAK---KNGLPHGKANTICQKATVHHSGE------------- 566
            ||.::|.|.::     |.|.:.::.:   :|.:|..:|.....: ....||:             
 Frog    23 SSSFKDFGKSK-----PSSPVVSEKEFNLENDIPEDEAGVTADE-NKQSSGKLSKKWRAVISRTM 81

  Fly   567 --------MRSSAKEIGAFNENGRNFVATKDTSRDFSNSQDNTDRGSMSDQAFACSASSVESLPS 623
                    |::.|.|||            :.|.   .:|..:|| ||: |.....|:...|:|.|
 Frog    82 NRKMGKEVMKAMAHEIG------------EPTG---PSSPISTD-GSI-DGMHRKSSDPEENLHS 129

  Fly   624 ASGSSTQALVRPGSPHSSISAEDRTSMASC-------IC-KAKALVDSLPNPYDKEALKFKKGDL 680
            .....|.:.....||...|:..|..::.:.       .| |||...|.:|:|||.::||.||||:
 Frog   130 PVSRQTSSGSEVFSPSFMINNRDSINLENLPPPYNGPFCGKAKVHTDFIPSPYDGDSLKLKKGDI 194

  Fly   681 IDVLSMNASGIWKGRCHGRVGHFKFINVEVLPE--QRMKNSSSKTLAAGSRLANSGNGSHNGGPC 743
            ||::.....|.|.|....::|.||||.|:::||  :..|.:.::|.....|..          |.
 Frog   195 IDIIEKPPVGTWTGMLRNKIGSFKFIYVDLVPEETETPKKTKTRTKVRSKRQK----------PK 249

  Fly   744 SVEDLLIRIGLKEYTSVFVLNGYEDLELFKELEPADLDYLGILNQEHRAKLLTAVQLLHDIECSD 808
            :|::||.||.::|:....:|||||.:|.||:|....|..|.|.:.:||.|||||.:.|.|.:   
 Frog   250 TVQELLERINMQEHIPTLLLNGYETIEDFKDLSENHLIELNITDPQHRVKLLTAAEFLLDYD--- 311

  Fly   809 VDIPGSSSENDEARLNNINMKHGASPFGRRHFPRDSGCYEGSPLPSSQTPTQAVNSTDESN--SL 871
                 :.||. |...:..:|:|..      |.||||||||||        ....||.|::.  |:
 Frog   312 -----TGSET-EGMTDTSSMEHSI------HIPRDSGCYEGS--------ENLENSRDDNEIISI 356

  Fly   872 D-DVVTKC---SSEIMKRV 886
            | |:...|   |:|:...|
 Frog   357 DEDIKNLCLVESTEVKHAV 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SKIPNP_001262827.1 SAM_Samd5 4..65 CDD:188926
SH3 657..710 CDD:473055 24/52 (46%)
SAM_superfamily 742..800 CDD:472832 26/57 (46%)
sash3NP_001016498.1 SLY 19..167 CDD:463602 32/166 (19%)
SH3_SASH3 169..224 CDD:212901 25/54 (46%)
SAM_SASH-like 247..306 CDD:188892 26/68 (38%)
Blue background indicates that the domain is not in the aligned region.

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