DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpI12 and RPA12

DIOPT Version :8

Sequence 1:NP_524439.1 Gene:RpI12 / 42563 FlyBaseID:FBgn0038903 Length:120 Species:Drosophila melanogaster
Sequence 2:NP_012597.1 Gene:RPA12 / 853526 SGDID:S000003824 Length:125 Species:Saccharomyces cerevisiae

Alignment Length:117 Identity:43/118 (36%)
Similarity:61/118 (52%) Gaps:6/118 (5%)


  Fly    10 FCPSCGSIL--PELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPS----KVFNRTKRES 68
            ||..||.:|  |...:..||.|..||..:....:|..|...|...:.:..|    |...:|..:.
Yeast     9 FCLDCGDLLENPNAVLGSNVECSQCKAIYPKSQFSNLKVVTTTADDAFPSSLRAKKSVVKTSLKK 73

  Fly    69 ESDADGPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
            ....||..::.|||:|.:::|:|.||||||||||.|||:||..|.:|...|:
Yeast    74 NELKDGATIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTSCGYKFRTNN 125

Known Domains:


GeneSequenceDomainRegion External IDIdentity
RpI12NP_524439.1 RPB9 10..119 CDD:224510 42/115 (37%)
Zn-ribbon_RPA12 73..119 CDD:259792 25/46 (54%)
RPA12NP_012597.1 RPB9 6..124 CDD:224510 42/115 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 C231827338
eggNOG 1 0.900 E1_COG1594
Hieranoid 1 1.000
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 80 1.000 Inparanoid score I1599
Isobase 1 0.950 0 Normalized mean entropy S1392
OMA 1 1.010
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 FOG0004072
OrthoInspector 1 1.000 T1136277
orthoMCL 1 0.900 OOG5_128752
Panther 1 1.100 LDO PTHR11239
Phylome 1 0.910 0.667 Consistency score
RoundUp 1 1.030 avgDist Average_Evolutionary_Distance R1171
TreeFam 1 0.960
1312.740

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