Protein Alignment Polr1H and rpa12

DIOPT Version :10

• Sequence 1: NP_524439.1
• Gene: Polr1H / 42563
• FlyBaseID: FBgn0038903
• Length: 120
• Species: Drosophila melanogaster
• Sequence 2: NP_588059.1
• Gene: rpa12 / 2538906
• PomBaseID: SPCC1259.03
• Length: 119
• Species: Schizosaccharomyces pombe
• Alignment Length: 112
• Identity: 36/112 - (32%)
• Similarity: 58/112 - (51%)
• Gaps: 2/112 - (1%)

  Fly    10 FCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESESD-AD 73
            ||..||::|.....:... |..|:..:..:.::....|.....:.:..:.....:..:.||. .:
pombe     9 FCSECGNLLESTTAQWTT-CDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIVQVESQKEE 72

  Fly    74 GPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
            ...:|.|||||.:|.|::.||||||||||.|||:.|.:|.:|.|.|:
pombe    73 AATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTNN 119

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr1H	NP_524439.1	RPB9	10..115	CDD:441202	33/105 (31%)
		Zn-ribbon_RPA12	73..119	CDD:259792	25/45 (56%)
rpa12	NP_588059.1	RPB9	9..114	CDD:441202	33/105 (31%)
		Zn-ribbon_RPA12	72..118	CDD:259792	25/45 (56%)