DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpI12 and rpa12

DIOPT Version :8

Sequence 1:NP_524439.1 Gene:RpI12 / 42563 FlyBaseID:FBgn0038903 Length:120 Species:Drosophila melanogaster
Sequence 2:NP_588059.1 Gene:rpa12 / 2538906 PomBaseID:SPCC1259.03 Length:119 Species:Schizosaccharomyces pombe

Alignment Length:112 Identity:36/113 (32%)
Similarity:58/113 (51%) Gaps:2/113 (2%)


  Fly    10 FCPSCGSILPELQVKGNVICYNCKKEFQPDVYSGEKSEFTIHFNTYDPSKVFNRTKRESESD-AD 73
            ||..||::|.....:... |..|:..:..:.::....|.....:.:..:.....:..:.||. .:
pombe     9 FCSECGNLLESTTAQWTT-CDQCQSVYPSEQFANLVVETKSSASAFPSALKLKHSIVQVESQKEE 72

  Fly    74 GPVVERKCPKCNHDKMSYATLQLRSADEGQTVFFTCLKCKFKESENS 120
            ...:|.|||||.:|.|::.||||||||||.|||:.|.:|.:|.|.|:
pombe    73 AATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECPRCAYKFSTNN 119

Known Domains:


GeneSequenceDomainRegion External IDIdentity
RpI12NP_524439.1 RPB9 10..119 CDD:224510 35/110 (32%)
Zn-ribbon_RPA12 73..119 CDD:259792 25/46 (54%)
rpa12NP_588059.1 RPB9 6..118 CDD:224510 35/110 (32%)
RPOL9 8..56 CDD:197822 8/48 (17%)
Zn-ribbon_RPA12 72..118 CDD:259792 25/46 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 1 1.000
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 71 1.000 Inparanoid score I1891
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 FOG0004072
OrthoInspector 1 1.000 T1125157
orthoMCL 1 0.900 OOG5_128752
Panther 1 1.100 LDO PTHR11239
Phylome 1 0.910 0.667 Consistency score
RoundUp 1 1.030 avgDist Average_Evolutionary_Distance R1171
TreeFam 1 0.960
98.950

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