DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bap and Tlx3

DIOPT Version :10

Sequence 1:NP_732637.1 Gene:bap / 42537 FlyBaseID:FBgn0004862 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_001414519.1 Gene:Tlx3 / 497881 RGDID:1564190 Length:291 Species:Rattus norvegicus


Alignment Length:139 Identity:46/139 - (33%)
Similarity:68/139 - (48%) Gaps:45/139 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 PPPLSSS----PSESPLSHDGSGLS---------------------------------------- 173
            ||||.|:    ||...:|..| ||:                                        
  Rat   101 PPPLPSALPAMPSVPTVSSLG-GLNFPWMESSRRFVKDRFTAAAALTPFTVTRRIGHPYQNRTPP 164

  Fly   174 RKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRRYKTKRKQIQQH 238
            ::|:.|.:||..|:.|||:||.:|:||:..||:.:||||::|:.|||.||||||.|.:|:..::.
  Rat   165 KRKKPRTSFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEER 229

  Fly   239 EAALLGASK 247
            ||....||:
  Rat   230 EAERQQASR 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bapNP_732637.1 Homeodomain 176..232 CDD:459649 30/55 (55%)
Tlx3NP_001414519.1 None

Return to query results.
Submit another query.