Protein Alignment bap and Lim3

DIOPT Version :10

• Sequence 1: NP_732637.1
• Gene: bap / 42537
• FlyBaseID: FBgn0004862
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_001260559.1
• Gene: Lim3 / 35184
• FlyBaseID: FBgn0002023
• Length: 555
• Species: Drosophila melanogaster
• Alignment Length: 265
• Identity: 46/265 - (17%)
• Similarity: 80/265 - (30%)
• Gaps: 100/265 - (37%)

  Fly    32 RSNPETRRMSSVDSEPEPEKLKPSSDRERSISKSPPLC--------------------------- 69
            :.:|....::....:|.||.:.....|.|::..:.|.|
  Fly    85 QQHPHHNHLAVDQDDPNPELVLALISRNRALEATIPKCGGCHELILDRFILKVLERTWHAKCLQC 149

  Fly    70 -------------------CR--------------DLGLYKLTQPKEIQPSARQPSNYLQYYAAA 101
                               |:              |:|:    .|.::...|:....:||.:..|
  Fly   150 SECHGQLNDKCFARNGQLFCKEDFFKRYGTKCSACDMGI----PPTQVVRRAQDNVYHLQCFLCA 210

  Fly   102 MDNNNHHHQATGTSNSSAADYM--QRKLAYFGSTLAAPLDMRRCTSNDSDCDSPPPLSSSPSESP 164
            |        .:.|.|:....|:  .|||.              |..:..:..:          ..
  Fly   211 M--------CSRTLNTGDEFYLMEDRKLI--------------CKRDYEEAKA----------KG 243

  Fly   165 LSHDGS--GLSRKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTETQVKIWFQNRR 227
            |..|||  |....||.|...:..|:..|:..:......:...|.::::...|....|::||||||
  Fly   244 LYLDGSLDGDQPNKRPRTTITAKQLETLKTAYNNSPKPARHVREQLSQDTGLDMRVVQVWFQNRR 308

  Fly   228 YKTKR 232
            .|.||
  Fly   309 AKEKR 313

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bap	NP_732637.1	Homeodomain	176..232	CDD:459649	15/55 (27%)
Lim3	NP_001260559.1	LIM1_Lhx3_Lhx4	122..173	CDD:188754	2/50 (4%)
		LIM2_Lhx3_Lhx4	181..236	CDD:188762	15/80 (19%)
		Homeodomain	257..313	CDD:459649	15/55 (27%)