Protein Alignment bap and cdx1b

DIOPT Version :10

• Sequence 1: NP_732637.1
• Gene: bap / 42537
• FlyBaseID: FBgn0004862
• Length: 382
• Species: Drosophila melanogaster
• Sequence 2: NP_001092232.1
• Gene: cdx1b / 100004956
• ZFINID: ZDB-GENE-070615-29
• Length: 255
• Species: Danio rerio
• Alignment Length: 322
• Identity: 72/322 - (22%)
• Similarity: 111/322 - (34%)
• Gaps: 120/322 - (37%)

  Fly    54 PSSDRERSISKSPPLCCRDLGLYKLTQPKEIQPSARQPSNYLQY-YAAAMDNNNHHHQATGTSNS 117
            |:|.|..|::               ..|:...|:..|..::..| :...:..|:.||..||:.|.
Zfish    15 PNSVRHPSLN---------------LNPQNFVPAPPQYPDFTGYHHVPGITTNDPHHSQTGSWNP 64

  Fly   118 SAADYMQRKLAYF-GSTLAAPLDMRRCTSNDSDCDSPPPLSS------------------SPSES 163
            :.....:....|. ||.:::       :|......|||..||                  ||:..
Zfish    65 AYPPPREEWTPYGPGSGVSS-------SSTGQLGFSPPEFSSVQTPGLLQSSINSSVGQLSPNAQ 122

  Fly   164 ------------PLSHDGSGLSRKKRSRAAFSHAQVFELERRFAQQRYLSGPERSEMAKSLRLTE 216
                        |.:..|.....|.:.|..::..|..|||:.|...||::...::|:|.:|.|:|
Zfish   123 RRNPYDWMRRSVPPASSGGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKAELATALSLSE 187

  Fly   217 TQVKIWFQNRRYKTK---RKQIQQHEAALLGASKRVPVQVLVREDGSTTYAHMAAPGAGHGLDPA 278
            .||||||||||.|.:   :|::||.:.|                  |||
Zfish   188 RQVKIWFQNRRAKERKINKKKMQQPQPA------------------STT---------------- 218

  Fly   279 LINIYRHQLQLAYGGLPLPQMQMPFPYFYPQHKVPQPIPPPTQSSSFVTASSASSSPVPIPI 340
                           .|.|          |...:|..:|..|.|||    ....|.|:|:.|
Zfish   219 ---------------TPTP----------PGSALPGNVPMVTSSSS----GGLVSPPMPMSI 251

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
bap	NP_732637.1	Homeodomain	176..232	CDD:459649	24/58 (41%)
cdx1b	NP_001092232.1	Caudal_act	13..140	CDD:461413	26/146 (18%)
		Homeodomain	148..203	CDD:459649	24/54 (44%)