Protein Alignment HHEX and Cdx4

DIOPT Version :10

• Sequence 1: NP_650938.2
• Gene: HHEX / 42495
• FlyBaseID: FBgn0038852
• Length: 323
• Species: Drosophila melanogaster
• Sequence 2: NP_001100412.1
• Gene: Cdx4 / 302400
• RGDID: 1561529
• Length: 288
• Species: Rattus norvegicus
• Alignment Length: 306
• Identity: 77/306 - (25%)
• Similarity: 119/306 - (38%)
• Gaps: 81/306 - (26%)

  Fly    32 GSSQSPVAV---TAGIATPHALAMPK--------ASLATGSSSAAPT-------PSPSSATNIYD 78
            |.|.||:..   ||....||.:..|.        .||...||..:|.       |.|||......
  Rat    33 GGSGSPLPASNFTAAPVYPHYMGYPHMSNMDPHGPSLGAWSSPYSPPREDWSTYPGPSSTMGTVP 97

  Fly    79 LSREAAAAQYAMKSMDSSAVLAPT----------SLRFNPIYPDPASLFYQQVLQLQKNPSLFMP 133
            :: :..::..|..|.|.| .|.||          ||      ||.||   :.::.:....|
  Rat    98 MN-DMTSSSPAFGSPDYS-TLGPTGGAGGASNGGSL------PDAAS---ESLVSIDSGTS---- 147

  Fly   134 HFQAAAVAAAAAVQPTAYCDQYSPFTMDCEGFPNPASAAAALYCNAYPAASFYMSNFGVKRKGGQ 198
                     ..|..|:.  .::||:                    |:...:..::.....::..:
  Rat   148 ---------GGATSPSR--SRHSPY--------------------AWMRKTVQVTGKTRTKEKYR 181

  Fly   199 IRFTSQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRRANLSKRSASAQG 263
            :.:|..|...||..|..::|::...:..||:.|.|::||||.||||||||.|:  :.|:..| |.
  Rat   182 VVYTDHQRLELEKEFHCNRYITIRRKSELAVNLGLSERQVKIWFQNRRAKERK--MIKKKIS-QF 243

  Fly   264 PIAGAAVGSPS-SASSSSVP--VLNLGSGSRCGQQSDEEDRMYLSE 306
            ..:|.:|.|.| |.|...:|  .....|..| |.|..|..::.:||
  Rat   244 ENSGGSVQSDSGSISPGELPNAFFTTPSAVR-GFQPIEIQQVIISE 288

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
HHEX	NP_650938.2	Homeodomain	200..251	CDD:459649	22/50 (44%)
Cdx4	NP_001100412.1	Caudal_act	13..174	CDD:461413	37/186 (20%)
		Homeodomain	179..234	CDD:459649	22/54 (41%)