DRSC/TRiP Functional Genomics Resources

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Protein Alignment HHEX and hoxa4

DIOPT Version :10

Sequence 1:NP_650938.2 Gene:HHEX / 42495 FlyBaseID:FBgn0038852 Length:323 Species:Drosophila melanogaster
Sequence 2:XP_004915454.1 Gene:hoxa4 / 101734089 XenbaseID:XB-GENE-486676 Length:251 Species:Xenopus tropicalis


Alignment Length:547 Identity:103/547 - (18%)
Similarity:156/547 - (28%) Gaps:231/547 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   303 PKLPNGMAKVNSLSESDTLEDEDDD-------EEEEDDAEEDDDTGAGRGANRFAKLKYRDSIMV 360
            |.||..:. :.:|.|::.|:|...:       ....|.|::....|||           ..|:.|
 Frog    32 PGLPQPIV-MEALDEAEGLQDSQREMPPPPPPSPPSDPAQKPPPRGAG-----------SHSLTV 84

  Fly   361 KTSNGVYGKRPQSQLLLA---------------NA-------------------------GVPST 385
            ::|..::.   .||.|||               ||                         ||||.
 Frog    85 RSSLCLFA---ASQFLLACGVLWFSGYGHIWSQNATNLVSSLLTLLKQLEPTAWLDSGTWGVPSL 146

  Fly   386 STSSTSPPSSEYDYAYITAINTH---------QPL-------SVMRSAGG--------------- 419
            .....|     .....:|.:..|         .||       ||.|....               
 Frog   147 LLVFLS-----VGLVLVTTLVWHLLRTPPEPPTPLPPEDRRQSVSRQPSFTYSEWMEEKIEDDFL 206

  Fly   420 DEAPVSTTVLPDYCITTI---CCPIEVHEGYYSDDESEGTDHKLSMYRGQGGGGPGGSGKLRHQQ 481
            |..||..|.:.| |:..|   ..|..:........|..|::..|::.....|....|.|.|...:
 Frog   207 DLDPVPETPVFD-CVMDIKPEADPTSLTVKSMGLQERRGSNVSLTLDMCTPGCNEEGFGYLMSPR 270

  Fly   482 HHSNAEYTTERRQYLNSK--------GFL--AYFVNL---FQDTLAAELDIPAEDLRSATWKGAV 533
            ..|..||.....:.|.::        .||  |.|..:   |.|  ..|.|||          |.|
 Frog   271 EESAREYLLSASRVLQAEELHEKALDPFLLQAEFFEIPMNFVD--PKEYDIP----------GLV 323

  Fly   534 VYSGQWEIVP------AILSPWPREAIEWVHRKRDVKINPLT----RQKFQWPTQ-PMIQKVKSF 587
            ..:....|:|      .:.||.|.:.:     ...:..|.:.    .:|....|| |::..|..|
 Frog   324 RKNRYKTILPNPHSRVCLTSPDPDDPL-----SSYINANYIRGYGGEEKVYIATQGPIVSTVADF 383

  Fly   588 GCHVIPSGYAPKQGQNRHRQLEWKIVFPE----------AERYLESC----------LTGTQIKI 632
                                  |::|:.|          .|...|.|          ..|.:|.:
 Frog   384 ----------------------WRMVWQEHTPIIVMITNIEEMNEKCTEYWPEEQVAYDGVEITV 426

  Fly   633 --------YMITVLLLKTFVEPTLTPGLSMFGLEHLRAHLFWQCETNYAAWPEDYLGEALLRFLN 689
                    |.:.::.||:        |....||:|     :|     :.:||:.           
 Frog   427 QKVIHTEDYRLRLISLKS--------GTEERGLKH-----YW-----FTSWPDQ----------- 462

  Fly   690 ALLDRIKTHTLPDYFLPARNLFENVPE 716
                  ||   ||...|..:|...|.|
 Frog   463 ------KT---PDRAPPLLHLVREVEE 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HHEXNP_650938.2 Homeodomain 200..251 CDD:459649
hoxa4XP_004915454.1 Homeodomain 158..214 CDD:459649 10/55 (18%)
Blue background indicates that the domain is not in the aligned region.

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