DRSC/TRiP Functional Genomics Resources

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Protein Alignment HHEX and shox

DIOPT Version :10

Sequence 1:NP_650938.2 Gene:HHEX / 42495 FlyBaseID:FBgn0038852 Length:323 Species:Drosophila melanogaster
Sequence 2:XP_004911874.1 Gene:shox / 100486480 XenbaseID:XB-GENE-920752 Length:334 Species:Xenopus tropicalis


Alignment Length:98 Identity:29/98 - (29%)
Similarity:48/98 - (48%) Gaps:6/98 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 VKRKGGQIRFTSQQTKNLEARFASSKYLSPEERRHLALQLKLTDRQVKTWFQNRRAKWRRANLSK 256
            :|::..:..||.:|...||..|..:.|.....|..|:.:|.|::.:|:.||||||||.|:.....
 Frog   154 LKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNRRAKCRKQENQM 218

  Fly   257 RSASAQGPIAGAAVGSPSSASSSSV-PVLNLGS 288
            ....     .|..:|:.|...:..| |.:|:|:
 Frog   219 HKGG-----YGVILGTGSHLETCRVAPYVNMGA 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HHEXNP_650938.2 Homeodomain 200..251 CDD:459649 20/50 (40%)
shoxXP_004911874.1 Homeodomain 157..213 CDD:459649 20/55 (36%)
OAR 314..330 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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