DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosalpha4T1 and psmb8

DIOPT Version :10

Sequence 1:NP_650910.1 Gene:Prosalpha4T1 / 42457 FlyBaseID:FBgn0265606 Length:249 Species:Drosophila melanogaster
Sequence 2:NP_001103512.2 Gene:psmb8 / 445258 XenbaseID:XB-GENE-479064 Length:281 Species:Xenopus tropicalis


Alignment Length:217 Identity:41/217 - (18%)
Similarity:90/217 - (41%) Gaps:39/217 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 YGRALTI---FSPDGHLLQVEYAQEAVR----KGSTAVGVRGANCVVLGVE-KSSVSEMQEDRTV 61
            |...|.:   :.|...|..:|...:.|:    .|:|.:..:..:.|::.|: ::|......:...
 Frog    33 YNTELAVPPGYQPAKFLEHLEEGVDDVKIEPWHGTTTLAFKFQHGVIVAVDSRASAGSYISNVKF 97

  Fly    62 RKISMLDRHVALAFAGLTADA----RILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQ 122
            .|:..::.::....:|..||.    |:|..    ||:.::|...:::::...::.:..:..:|  
 Frog    98 NKVIEINPYLLGTMSGSAADCQYWERVLAK----ECRLYQLRNNSRISVSAASKLMCNMMLQY-- 156

  Fly   123 CNGRRPFGIS--CLIGGIDADGSARLFHTEPSG------IFHEYKATATGRWANTVREFFEKAYS 179
                |..|:|  .:|.|.|..|.. |::...:|      ||      :||...:......:..|.
 Frog   157 ----RGTGLSVGSMICGWDKKGPG-LYYVNDNGTRLCGDIF------STGSGNSYAYGVMDSGYR 210

  Fly   180 DHEVTTKCDAIKLAMRALLEVT 201
             :::|.: :|..|..||:...|
 Frog   211 -YDLTPE-EAYDLGRRAISYAT 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosalpha4T1NP_650910.1 proteasome_alpha_type_7 5..213 CDD:239724 41/217 (19%)
psmb8NP_001103512.2 None

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