DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4360 and gl

DIOPT Version :10

Sequence 1:NP_650879.1 Gene:CG4360 / 42413 FlyBaseID:FBgn0038787 Length:556 Species:Drosophila melanogaster
Sequence 2:NP_001262708.1 Gene:gl / 42210 FlyBaseID:FBgn0004618 Length:679 Species:Drosophila melanogaster


Alignment Length:522 Identity:119/522 - (22%)
Similarity:173/522 - (33%) Gaps:198/522 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MHLNHATAATAAMANYQHYQLPASHGGGGGGGGGGGGGGGSNGGSG------------------- 46
            ||..|      ....:|..|:.|||.|.......||...||||.:|                   
  Fly   206 MHSQH------QQHQHQQSQVQASHVGNSLLQSSGGNNIGSNGSAGGVANAASCYYETSAGTAAP 264

  Fly    47 PGPNSGQQQPTTLASLQQS---------------PFALHQL-----------TAVQAIQHPTHQA 85
            |.|.:....|:...::..:               |....|:           .|..|..:..:..
  Fly   265 PPPPAAAMYPSMSVNVSMNMTMHHGYGAGDAGGVPMQCSQMNWTPPSNSTSAAAAAAAVNVLYPP 329

  Fly    86 MLHPQH-------------------------PL-VHLLDISTTTANSG-------GGGGGSHTP- 116
            :|.|.|                         || |...:..:..|||.       |.|...:|| 
  Fly   330 LLSPGHYPASATYSFTADFRAPAPTGLGALPPLTVGEKESPSPPANSSLAGYYPTGVGNQGYTPP 394

  Fly   117 -ISPMKQEVQ------SVISEEEVVVDD----------PRKKKQCHVCKNKFRQLTTLRNHMKIH 164
             .||...:..      |...:||...:|          ..|...|.:|...:.:.:||:.|::.|
  Fly   395 HKSPTSYQAAALGLSLSAFEDEEDSNEDLDGDEGSSGGEMKPNLCRLCGKTYARPSTLKTHLRTH 459

  Fly   165 TDERPYKCKHCDKAFRQISTLTNHVKIHTGEKPFTCNICAKDFRQQSTLINHIKTHKAAESSTPT 229
            :.||||:|..|:|:|.|.:.||.||:.|||:                                  
  Fly   460 SGERPYRCPDCNKSFSQAANLTAHVRTHTGQ---------------------------------- 490

  Fly   230 SLLNYQPQTGSGKHRKSQMHQAYQQQHQRVQISKTLYSGSYSSPAAEELVKPFQCSVCKRRFPQL 294
                                                              |||:|.:|.|||.|.
  Fly   491 --------------------------------------------------KPFRCPICDRRFSQS 505

  Fly   295 STLHNHERTHIDPKPYKCETCDKSFSQLATLANHKKIHTGDKPYTCSYCHMQFRQQSTLTNHLKT 359
            |::..|.|||...:||:|.:|.||||..:||..|.:||:|:|||.|..|.::|.|...|..|::.
  Fly   506 SSVTTHMRTHSGERPYRCSSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRV 570

  Fly   360 HTHQIAPGGVGGAGGGGGAVTATVDHSMPAPLAPGTQQLTSGLLPNNLHGSTANIIQLDHHPLLH 424
            |.:..:..|..||.|.||      :.|..:.:..|...||  ..|.:..|     .|..|.|..|
  Fly   571 HGNNNSSNGSNGATGVGG------ESSTGSGVGGGNSLLTX-QKPRSAGG-----FQHYHPPHTH 623

  Fly   425 FL 426
            .:
  Fly   624 HM 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4360NP_650879.1 C2H2 Zn finger 144..164 CDD:275368 5/19 (26%)
zf-H2C2_2 157..181 CDD:463886 11/23 (48%)
C2H2 Zn finger 172..192 CDD:275368 9/19 (47%)
C2H2 Zn finger 200..220 CDD:275368 0/19 (0%)
zf-C2H2_8 281..366 CDD:464935 37/84 (44%)
C2H2 Zn finger 284..304 CDD:275368 9/19 (47%)
C2H2 Zn finger 312..332 CDD:275368 9/19 (47%)
zf-H2C2_2 325..349 CDD:463886 11/23 (48%)
C2H2 Zn finger 340..360 CDD:275368 6/19 (32%)
C2H2 Zn finger 478..498 CDD:275368
C2H2 Zn finger 506..526 CDD:275368
zf-H2C2_2 519..543 CDD:463886
C2H2 Zn finger 534..554 CDD:275368
glNP_001262708.1 COG5048 <426..571 CDD:227381 60/228 (26%)
C2H2 Zn finger 439..459 CDD:275368 5/19 (26%)
C2H2 Zn finger 467..487 CDD:275368 9/19 (47%)
C2H2 Zn finger 495..515 CDD:275368 9/19 (47%)
C2H2 Zn finger 523..543 CDD:275368 9/19 (47%)
C2H2 Zn finger 551..571 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.

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