| Sequence 1: | NP_650821.2 | Gene: | Nup58 / 42342 | FlyBaseID: | FBgn0038722 | Length: | 546 | Species: | Drosophila melanogaster |
|---|---|---|---|---|---|---|---|---|---|
| Sequence 2: | NP_112336.2 | Gene: | Nup98 / 81738 | RGDID: | 71033 | Length: | 1816 | Species: | Rattus norvegicus |
| Alignment Length: | 450 | Identity: | 118/450 - (26%) |
|---|---|---|---|
| Similarity: | 151/450 - (33%) | Gaps: | 158/450 - (35%) |
- Green bases have known domain annotations that are detailed below.
|
Fly 3 TPTTNNAIGGATAATGAF---AFG-------------------------ARPATTTAPPPSFGAA 39
Fly 40 TSTPT--FGAAPATTSLFAAPAATPAFGAPAATPAFGAPASTPG-FGATSTAAPAFGTAAATPAF 101
Fly 102 GIPAATSA-------FGAPAATPAF---------------------------------------- 119
Fly 120 ------GAAAATPAFG-APA---ATPAFGAPAATSAFGAPAATTAFGAPASTQASAFGA-PAPAV 173
Fly 174 G--TVAPTFSFATPATSAPTTAPPAFGFGTTATTAAAAMPASLSSGIGSFSFPKPQATTAASLNF 236
Fly 237 NTTTTTATAQPFNTGLKL-----------GTT----NATTTLG------------GGGIF-SKP- 272
Fly 273 ------------------AGQA---AAPAASTF-VGLG---GIDVTATQPKLGDNKQDGI 307 |
| Gene | Sequence | Domain | Region | External ID | Identity |
|---|---|---|---|---|---|
| Nup58 | NP_650821.2 | PHA03247 | <25..195 | CDD:223021 | 62/232 (27%) |
| Nucleoporin_FG2 | 136..>525 | CDD:374260 | 64/228 (28%) | ||
| Nup98 | NP_112336.2 | FG repeats 1 | 1..156 | 40/136 (29%) | |
| Nucleoporin_FG | 25..149 | CDD:290362 | 35/124 (28%) | ||
| NupH_GANP | 26..336 | CDD:293373 | 83/322 (26%) | ||
| GLEBS, interaction with RAE1. /evidence=ECO:0000250 | 157..213 | 3/55 (5%) | |||
| FG repeats 2 | 214..480 | 73/254 (29%) | |||
| Nucleoporin_FG | 215..303 | CDD:290362 | 29/91 (32%) | ||
| Nucleoporin_FG | 261..392 | CDD:290362 | 39/138 (28%) | ||
| Nucleoporin2 | 740..880 | CDD:282016 | |||
| Nup96 | 1333..1624 | CDD:288926 | |||
| Blue background indicates that the domain is not in the aligned region. | |||||
| Tool | Simple Score | Weighted Score | Original Tool Information | |||
|---|---|---|---|---|---|---|
| BLAST Result | Score | Score Type | Cluster ID | |||
| Compara | 0 | 0.000 | Not matched by this tool. | |||
| Domainoid | 0 | 0.000 | Not matched by this tool. | |||
| eggNOG | 1 | 0.900 | - | - | E1_KOG0845 | |
| Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
| Homologene | 0 | 0.000 | Not matched by this tool. | |||
| Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
| OMA | 0 | 0.000 | Not matched by this tool. | |||
| OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
| OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
| OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
| orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
| Panther | 0 | 0.000 | Not matched by this tool. | |||
| Phylome | 0 | 0.000 | Not matched by this tool. | |||
| SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
| SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
| TreeFam | 0 | 0.000 | Not matched by this tool. | |||
| 1 | 0.900 | |||||