DRSC/TRiP Functional Genomics Resources

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Protein Alignment snRNP-U1-C and snrpc

DIOPT Version :10

Sequence 1:NP_650767.1 Gene:snRNP-U1-C / 42274 FlyBaseID:FBgn0261792 Length:145 Species:Drosophila melanogaster
Sequence 2:NP_001016598.1 Gene:snrpc / 549352 XenbaseID:XB-GENE-495092 Length:159 Species:Xenopus tropicalis


Alignment Length:154 Identity:92/154 - (59%)
Similarity:103/154 - (66%) Gaps:28/154 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLIDATTAAFKAGKITNN 65
            |||:|||||||||||||||||||||:||||::|||.|||||||||||.|||.|||||:.|||...
 Frog     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPT 65

  Fly    66 PFAGGPGGAPPKPAGVSIPPPNMGAPPRPGMPGMPYMPPLMNPMMGMRPPPIMNPMAMMGPPP-- 128
            |||..|.|:...|     |||:||.||||||  || .||:..|.|          |.||||||  
 Frog    66 PFAAPPAGSAMIP-----PPPSMGGPPRPGM--MP-APPMAGPPM----------MPMMGPPPPG 112

  Fly   129 --PLGTIPGVRP------GIMNGP 144
              |:|..||:||      .:|.||
 Frog   113 MMPVGHGPGMRPPMGAHMPMMPGP 136

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
snRNP-U1-CNP_650767.1 zf-U1 1..38 CDD:368798 31/36 (86%)
snrpcNP_001016598.1 zf-U1 1..38 CDD:368798 31/36 (86%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 63..95 19/39 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 139..159
Blue background indicates that the domain is not in the aligned region.

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