Protein Alignment snRNP-U1-C and usp103

DIOPT Version :10

• Sequence 1: NP_650767.1
• Gene: snRNP-U1-C / 42274
• FlyBaseID: FBgn0261792
• Length: 145
• Species: Drosophila melanogaster
• Sequence 2: NP_595384.1
• Gene: usp103 / 2541289
• PomBaseID: SPBP35G2.09
• Length: 182
• Species: Schizosaccharomyces pombe
• Alignment Length: 140
• Identity: 51/140 - (36%)
• Similarity: 66/140 - (47%)
• Gaps: 25/140 - (17%)

  Fly     1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLID--ATTAAFKAGKIT 63
            ||:|.||||..:|||||.||||.|..||.|..||:.||.|..:|:||..::  |::...|.|
pombe     1 MPRYLCDYCQVWLTHDSQSVRKAHNAGRAHIQNVQDYYTKVAQEEAQKQLEERASSGFLKKG--- 62

  Fly    64 NNPFAGGPGGAPPKPAGVSIPPP----NMGAPPRPG-MPGMPYMPPL-MNPMMGMRPPPIM---- 118
                    .|:...|...:.||.    |:|.||.|. :....||.|. ||.|......|:|
pombe    63 --------NGSLDLPYAYAFPPKYNVFNLGCPPPPYIVSANTYMAPKGMNAMNAAAFVPMMPAVN 119

  Fly   119 --NPMAMMGP 126
              |.:|...|
pombe   120 LTNQVAFSAP 129

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
snRNP-U1-C	NP_650767.1	zf-U1	1..38	CDD:368798	22/36 (61%)
usp103	NP_595384.1	COG5136	1..182	CDD:227465	51/140 (36%)