DRSC/TRiP Functional Genomics Resources

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Protein Alignment: snRNP-U1-C and Snrpc

Sequence 1:NP_650767.1 Gene:snRNP-U1-C FlyBaseID:FBgn0261792 Length:145 Species:Drosophila melanogaster
Sequence 2:NP_035562.1 Gene:Snrpc MGIID:109489 Length:159 Species:Mus musculus

Alignment Length:153 Identity:92/154 (60%)
Similarity:106/154 (69%) Gaps:26/154 (17%)


  Fly     1 MPKYYCDYCDTYLTHDSPSVRKTHCTGRKHRDNVKFYYQKWMEEQAQHLIDATTAAFKAGKITNN 65
            |||:|||||||||||||||||||||:||||::|||.|||||||||||.|||.|||||:.|||...
Mouse     1 MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPA 65

  Fly    66 PFAGGPGGAPPKPAGVSI-PPPNMGAPPRPGMPGMPYM--PPLMNPMMGMRPPPIMNPMAMMGPP 127
            ||:     ||| |||..| |||::..||||||...|:|  ||:| ||||..||.:|         
Mouse    66 PFS-----APP-PAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMM-PMMGPPPPGMM--------- 114

  Fly   128 PPLGTIPGVRP------GIMNGP 144
             |:|..||:||      .:|.||
Mouse   115 -PVGPAPGMRPPMGGHMPMMPGP 136

Known Domains:


GeneSequenceDomainRegion External IDIdentity
snRNP-U1-CNP_650767.1 zf-U1 1..38 CDD:114912 32/37 (86%)
SnrpcNP_035562.1 zf-U1 1..38 CDD:310663 32/37 (86%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG5136
Hieranoid 1 1.000
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 171 1.000 Inparanoid score I4083
Isobase 00.000 Not matched by this tool.
OMA 1 1.010
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 FOG0004124
OrthoInspector 1 1.000 T1084012
orthoMCL 1 0.900 OOG5_129565
Panther 1 1.100 LDO PTHR31148
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 avgDist Average_Evolutionary_Distance R1268
TreeFam 1 0.960
109.950

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