DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17801 and ranshi

DIOPT Version :10

Sequence 1:NP_650660.2 Gene:CG17801 / 42144 FlyBaseID:FBgn0038550 Length:381 Species:Drosophila melanogaster
Sequence 2:NP_649824.1 Gene:ranshi / 41041 FlyBaseID:FBgn0037620 Length:346 Species:Drosophila melanogaster


Alignment Length:355 Identity:100/355 - (28%)
Similarity:154/355 - (43%) Gaps:48/355 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 LAKIKDLTGIWLEQNERQPRHICPSCLNDLNTSIKLKKRIQRVHNEATLRRESGLDEDLESTVSD 95
            |..||.|||..|:.....|..:|.||...|..:|..::|...|..|....::   |||.    ..
  Fly    30 LEHIKLLTGAVLKNCSTLPNRLCASCQTCLQQAISFRERCLEVQRELLHSQD---DEDF----LR 87

  Fly    96 IEPEGDSSDLESEESYDSENYPFDKKAEESDIDLNLAHEDRRNEPHNPYDSETPLIFKHKNPLIE 160
            |..|...|.||.||          .:.:.::|.:.:...|..||  .|..|..   ||.::.|.|
  Fly    88 ICQESPKSVLEQEE----------LELDLAEISIEVERLDDLNE--GPIQSSG---FKVEDILNE 137

  Fly   161 TPSFANENLPNKVDAKSPKKGNFIQIGTDLRLLTTYPSIKVVKPLALAPEDVAAENVPPAKRTAR 225
              |..||:.||..|.....:.:::...:|..:              .|.:::.:::..|.||..|
  Fly   138 --SKINEDEPNNEDDIDYSEMDYLIYESDTEV--------------DAKQELKSDSENPKKRRNR 186

  Fly   226 K-----MQSLVCPKCGRVFKTPYNLKTHMVRHTGEKNFPCTFCDKRFVTKYLARLHERVRHMGEQ 285
            :     .::..|.:||...|...:...|..||.|.|.|.|.||:.||.|....:.|.| :|.||:
  Fly   187 RNPRDSNRTFFCEECGNHIKDRISFILHCKRHRGVKEFGCEFCEDRFCTPAELKRHIR-KHTGEK 250

  Fly   286 PFECNFCSATFFTSTAKSSHERIRHIRDLRYQCDQCTKRFNTKTCLNKHKFLHSGLKPFDCVICQ 350
            ||:|..||.:|...:.:..||| .|..:..:.|.:|...|.|...|..|..:|:|.|.|.|.:|.
  Fly   251 PFKCRHCSRSFSDYSTRLKHER-THTNERPFVCKECNNAFTTSYILKNHMLVHTGEKAFRCDLCD 314

  Fly   351 INFARKATLRSHFDSVAHQK---RASAILE 377
            ..|:|...|.:|:.|.||::   :|..|.:
  Fly   315 KLFSRYTHLTTHYRSNAHRRNMQKADTIFD 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17801NP_650660.2 zf-AD 9..76 CDD:462262 15/44 (34%)
zf-C2H2 231..252 CDD:395048 5/20 (25%)
C2H2 Zn finger 232..252 CDD:275368 5/19 (26%)
zf-H2C2_2 244..269 CDD:463886 11/24 (46%)
C2H2 Zn finger 260..281 CDD:275368 8/20 (40%)
C2H2 Zn finger 289..308 CDD:275368 6/18 (33%)
C2H2 Zn finger 318..338 CDD:275368 6/19 (32%)
C2H2 Zn finger 346..362 CDD:275368 5/15 (33%)
ranshiNP_649824.1 zf-AD 5..76 CDD:462262 15/45 (33%)
C2H2 Zn finger 198..218 CDD:275368 5/19 (26%)
COG5048 222..>276 CDD:227381 23/55 (42%)
C2H2 Zn finger 226..246 CDD:275368 8/20 (40%)
zf-H2C2_2 238..262 CDD:463886 10/24 (42%)
C2H2 Zn finger 254..274 CDD:275368 7/20 (35%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-H2C2_2 295..319 CDD:463886 9/23 (39%)
C2H2 Zn finger 310..328 CDD:275368 6/17 (35%)

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