DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5225 and dpy-4

DIOPT Version :8

Sequence 1:NP_650587.1 Gene:CG5225 / 42053 FlyBaseID:FBgn0038468 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_502808.1 Gene:dpy-4 / 178414 WormBaseID:WBGene00001066 Length:289 Species:Caenorhabditis elegans

Alignment Length:202 Identity:76/203 (37%)
Similarity:82/203 (40%) Gaps:61/203 (30%)


  Fly    40 APAQSVIYKLPPQHYYPPPPPPPPPPPQHCNCPPGPPGPPGPPGLPGTPGPQGPKGHTGSKGERG 104
            ||.|......|||....|..|||..|     ||.|||||||.||:||..||.            |
 Worm   112 APGQPGTPGRPPQQPCEPTTPPPCQP-----CPQGPPGPPGQPGIPGDNGPP------------G 159

  Fly   105 EKGERGHYGLPGQPGEPGPIGPPGLPGPPGHKSGHGHHDHHDHHHHHPAPPPPPPPPPPPPP--- 166
            |:|.:|....||:||..|||||||.||..|.....|          .||...|..|.||.||   
 Worm   160 EQGPKGPDAAPGEPGPKGPIGPPGPPGQAGAPGEPG----------SPAKSEPAVPGPPGPPGQA 214

  Fly   167 ----PPPPPHSHPHSHHPHPPIVTPPIIVPIPLPPQKGEHGHHHHHKGSKGPPGPPGPPG-TGPP 226
                ||.||.|:.....|..|                          |:||.||.||.|| .|.|
 Worm   215 GQQGPPGPPGSNGIDGAPGAP--------------------------GAKGEPGTPGEPGKDGEP 253

  Fly   227 GPPGPPG 233
            |.||.||
 Worm   254 GKPGTPG 260

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG5225NP_650587.1 None
dpy-4NP_502808.1 Col_cuticle_N 12..64 CDD:198156
Collagen <226..269 CDD:189968 18/62 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR24023
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.