DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment abd-A and Cdx2

DIOPT Version :10

Sequence 1:NP_732176.1 Gene:abd-A / 42037 FlyBaseID:FBgn0000014 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_076453.1 Gene:Cdx2 / 66019 RGDID:621234 Length:310 Species:Rattus norvegicus


Alignment Length:413 Identity:101/413 - (24%)
Similarity:137/413 - (33%) Gaps:161/413 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 HHISKLAAAAVASHGHAHQQLLLTPPSAGNSQAGDSSCSPSPS--ASGSSSLHRSLNDNSPGSAS 228
            :|::..||||...                     ||:.||.||  .:..:.|....|..:||   
  Rat    43 YHVAAAAAAAANL---------------------DSAQSPGPSWPTAYGAPLREDWNGYAPG--- 83

  Fly   229 ASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYT 293
               .|:||::||......:.||:..::.|...   :..:||..|.                    
  Rat    84 ---GAAAANAVAHGLNGGSPAAAMGYSSPAEY---HAHHHPHHHP-------------------- 122

  Fly   294 DTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPASGVM----PG 354
                                    .|..||.|.                     |||::    ||
  Rat   123 ------------------------HHPAAAPSC---------------------ASGLLQTLNPG 142

  Fly   355 AGGAGGAGIAD--LPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRG--RQTYTRFQTLELEK 415
            ..|......|:  .|......|.:||..|.:..:     |.....|.:.  |..||..|.|||||
  Rat   143 PPGPAATAAAEQLSPSGQRRNLCEWMRKPAQPSL-----GSQVKTRTKDKYRVVYTDHQRLELEK 202

  Fly   416 EFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARRDREEQEKMKAQ 480
            |||::.|:|.||:.|:|..|.|:|||:||||||||.|.:|       ||                
  Rat   203 EFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERK-------IN---------------- 244

  Fly   481 ETMKSAQQNKQVQQQQQQQQQQQQQQQQQHQQQQQQPQDHHSIIAHNPGHLHHSVVGQNDLKLGL 545
                          :::.|||||||.......|..|||.........|.....|:.|        
  Rat   245 --------------KKKLQQQQQQQPPAPPPPQPSQPQSGALRSVPEPLSPVTSLQG-------- 287

  Fly   546 GMGVGVGVGGIGPGIGGGLGGNL 568
                  .|.|..||:.|..||.|
  Rat   288 ------SVPGSVPGVLGPAGGVL 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
abd-ANP_732176.1 Homeodomain 399..455 CDD:459649 32/57 (56%)
Abdominal-A 456..478 CDD:403567 2/21 (10%)
Cdx2NP_076453.1 Caudal_act 13..178 CDD:461413 42/234 (18%)
Homeodomain 187..242 CDD:459649 32/54 (59%)

Return to query results.
Submit another query.