Protein Alignment abd-A and Cdx2

DIOPT Version :9

• Sequence 1: NP_732176.1
• Gene: abd-A / 42037
• FlyBaseID: FBgn0000014
• Length: 590
• Species: Drosophila melanogaster
• Sequence 2: NP_076453.1
• Gene: Cdx2 / 66019
• RGDID: 621234
• Length: 310
• Species: Rattus norvegicus
• Alignment Length: 413
• Identity: 101/413 - (24%)
• Similarity: 137/413 - (33%)
• Gaps: 161/413 - (38%)

  Fly   166 HHISKLAAAAVASHGHAHQQLLLTPPSAGNSQAGDSSCSPSPS--ASGSSSLHRSLNDNSPGSAS 228
            :|::..||||...                     ||:.||.||  .:..:.|....|..:||
  Rat    43 YHVAAAAAAAANL---------------------DSAQSPGPSWPTAYGAPLREDWNGYAPG--- 83

  Fly   229 ASASASAASSVAAAAAAAAAAASSSFAIPTSKMYPYVSNHPSSHGGLSGMAGFTGLEDKSCSRYT 293
               .|:||::||......:.||:..::.|...   :..:||..|.
  Rat    84 ---GAAAANAVAHGLNGGSPAAAMGYSSPAEY---HAHHHPHHHP-------------------- 122

  Fly   294 DTVMNSYQSMSVPASASAQFAQFYQHATAAASAVSAASAGAIGVDSLGNACTQPASGVM----PG 354
                                    .|..||.|.                     |||::    ||
  Rat   123 ------------------------HHPAAAPSC---------------------ASGLLQTLNPG 142

  Fly   355 AGGAGGAGIAD--LPRYPWMTLTDWMGSPFERVVCGDFNGPNGCPRRRG--RQTYTRFQTLELEK 415
            ..|......|:  .|......|.:||..|.:..:     |.....|.:.  |..||..|.|||||
  Rat   143 PPGPAATAAAEQLSPSGQRRNLCEWMRKPAQPSL-----GSQVKTRTKDKYRVVYTDHQRLELEK 202

  Fly   416 EFHFNHYLTRRRRIEIAHALCLTERQIKIWFQNRRMKLKKELRAVKEINEQARRDREEQEKMKAQ 480
            |||::.|:|.||:.|:|..|.|:|||:||||||||.|.:|       ||
  Rat   203 EFHYSRYITIRRKAELAATLGLSERQVKIWFQNRRAKERK-------IN---------------- 244

  Fly   481 ETMKSAQQNKQVQQQQQQQQQQQQQQQQQHQQQQQQPQDHHSIIAHNPGHLHHSVVGQNDLKLGL 545
                          :::.|||||||.......|..|||.........|.....|:.|
  Rat   245 --------------KKKLQQQQQQQPPAPPPPQPSQPQSGALRSVPEPLSPVTSLQG-------- 287

  Fly   546 GMGVGVGVGGIGPGIGGGLGGNL 568
                  .|.|..||:.|..||.|
  Rat   288 ------SVPGSVPGVLGPAGGVL 304

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
abd-A	NP_732176.1	Homeobox	402..454	CDD:278475	32/51 (63%)
		Abdominal-A	456..478	CDD:289192	2/21 (10%)
Cdx2	NP_076453.1	Caudal_act	13..170	CDD:282574	41/221 (19%)
		Homeobox	189..241	CDD:278475	32/51 (63%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910