DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hel89B and smarca5

DIOPT Version :10

Sequence 1:NP_732097.2 Gene:Hel89B / 41943 FlyBaseID:FBgn0022787 Length:1923 Species:Drosophila melanogaster
Sequence 2:NP_001007993.1 Gene:smarca5 / 493355 XenbaseID:XB-GENE-494817 Length:1049 Species:Xenopus tropicalis


Alignment Length:674 Identity:208/674 - (30%)
Similarity:306/674 - (45%) Gaps:100/674 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly  1279 GAMSDP--------DESVR----LLSTHCFANLVQ-------LMPL-----------DGKTEQLK 1313
            |...||        |.|.|    |..|..||:.:|       ..||           |.|.:.|.
 Frog    69 GNEMDPAYEEKRKTDRSNRFEYLLKQTEVFAHFIQPAAQKTPTSPLKMKPGRPRLKKDEKQDLLS 133

  Fly  1314 SDPLQARKTRDREFLDYLFNPKSIPNYKV---PVPISVE---LRCYQQAGINWLWFLNKYNLHGI 1372
            ....:.|:|...|..:.|.......|...   ..|..|:   ||.||..|:|||..|.:..::||
 Frog   134 MGDYRHRRTEQEEDEELLTESSKTTNVCTRFEDSPSYVKGGTLRDYQVRGLNWLISLYENGINGI 198

  Fly  1373 LCDDMGLGKTLQTICILAGDHMHRQTANLANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHY 1437
            |.|:||||||||||.:|.....:|....    |.:|:.|.:...:|:.|.::::..   |..:..
 Frog   199 LADEMGLGKTLQTISLLGYMKHYRSIPG----PHMVLVPKSTLHNWMAEFKRWVPS---LCAICL 256

  Fly  1438 YGFPVGREKLRSDI--GTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIK 1500
            .|....|.....|:  ..:.::.|.||:.:.|:...|...::.|.|:||.|.|||.|:|.|:.::
 Frog   257 IGDKDHRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVR 321

  Fly  1501 RLKANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGV 1565
            ..|..:||:|:|||:|||:.|||:|.:||:|....:.:.|...|        |..:...:|:   
 Frog   322 EFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWF--------DTNNCLGDQK--- 375

  Fly  1566 LAMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKLGDSS 1630
             .:|.||..:.||||||:|.||.|.||||....:...||.:|...|    .|.|...:|.|..|.
 Frog   376 -LVERLHMVLKPFLLRRIKADVEKSLPPKKEIKIYVGLSKMQREWY----TKILMKDIDILNSSG 435

  Fly  1631 SASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQSEELTKVTSQLALSNSSLDDIEHSAKLPAL 1695
            ...        |..:...|..|:..||||.| ...:|.....|:.:.|..:|...:.....||.|
 Frog   436 KTD--------KMRLLNILMQLRKCCNHPYL-FDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPRL 491

  Fly  1696 KQLLLDCGIGVQTESVSQHRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVN 1760
            |:              ...|.|||.|:..:|||:|...:.|   :..|.||||..|..:|||.:.
 Frog   492 KE--------------QGSRVLIFSQMTRVLDILEDYCMWR---NYEYCRLDGQTPHEERQDSII 539

  Fly  1761 NFNSDPSID-VLLLTTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLI 1824
            .:|:..|.. :.:|:|..||||:||..||.||..:.||||..|||||||||||||.|.|.|:|.|
 Frog   540 AYNAPGSSKFIFMLSTRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRYI 604

  Fly  1825 TRNSLEEKIMGLQKFKILTANTVVS---AENASLQTMGTSQIFDLFNGG-----KDKGAESGSSA 1881
            |.|::||:|:...:.|:...:.|:.   ..:.:|..:|..::..:...|     ..|.:|.....
 Frog   605 TDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKLGKDEMLQMIRHGATHVFASKDSEITEED 669

  Fly  1882 VQGTASGG----MSMNTIIENLPE 1901
            :......|    ..||..:.|:.|
 Frog   670 INAILERGEKKTAEMNEKLSNMGE 693

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hel89BNP_732097.2 HEAT repeat 5..30 CDD:293787
HEAT repeat 42..70 CDD:293787
HEAT repeat 395..420 CDD:293787
HEAT repeat 433..465 CDD:293787
HEAT repeat 475..504 CDD:293787
HEAT repeat 516..540 CDD:293787
HEAT repeat 560..589 CDD:293787
DUF3535 654..1138 CDD:463447
HepA <1342..1849 CDD:440319 177/515 (34%)
smarca5NP_001007993.1 PLN03142 7..1004 CDD:215601 208/674 (31%)
Blue background indicates that the domain is not in the aligned region.

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