DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rbf2 and rbl1

DIOPT Version :9

Sequence 1:NP_524372.1 Gene:Rbf2 / 41941 FlyBaseID:FBgn0038390 Length:783 Species:Drosophila melanogaster
Sequence 2:NP_001124082.1 Gene:rbl1 / 795522 ZFINID:ZDB-GENE-030131-8179 Length:1058 Species:Danio rerio


Alignment Length:1053 Identity:225/1053 - (21%)
Similarity:375/1053 - (35%) Gaps:332/1053 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ETCEVEGEAETLVRRFSVSCEQLELEARIQQSALSTYHRLDAVNGLSTSEADAQEWLCCAVYSEL 66
            :|..|.....::...|...|::|.::......||..:.   ::....|.|.|...||.|::|:..
Zfish     7 DTESVRSADGSIRSNFEALCQELNMDEETAAEALQNFR---SIWNTYTLEGDVMHWLACSLYAAC 68

  Fly    67 QRSKMRDIRESINEANDSVAKNCCWNVSLTRLLRSFKMNVSQFLRRMEHWNWLTQNENTFQLEVE 131
            ::|.:..:...:.|.|       |  |||||:|||.|:::.||..:|:.|:.:......|:..:.
Zfish    69 RKSSIPTVGRGVMEGN-------C--VSLTRILRSAKLSLIQFFSKMKKWSDMANLCQDFRSRIG 124

  Fly   132 ELRCRLGITSTLLRHYKHIFRSLFVHPGKGADPGAAN---------HYQALYEFGWLLFLVIRNE 187
            .|.....:::.:.|.::.||..:|.:| :...|....         |...:::|.|.||:..:..
Zfish   125 RLERNFEVSTVIFRKFEPIFLDMFQNP-QSEPPRMPRSRKHRRLPCHISDVFKFCWTLFVYTKGN 188

  Fly   188 LPGFAITNLINGCQVLVCTMDLLFVNALEVP-RSVVIRREFSGVPKNWDTEDFN--PILLNKYSV 249
            ..... .:|:|...:|:|.:||:|.|||... |..:|.:.|.|:||  |||:..  |.:::|  :
Zfish   189 FHMIG-DDLVNSYHLLLCCLDLVFCNALMCSNRKDLINQNFRGLPK--DTENLKEMPCVIDK--L 248

  Fly   250 LEALGELIPELPAKGVVQMKNAFFHKALIMLYMDHSLVGDDTHMREIIKEGMLDINLENLNRKYT 314
            .|....|:.|  |||:   |..:|...:..|:....|.||...:.|::.......|.:.:||.|.
Zfish   249 CELHDGLVVE--AKGI---KEHYFKPYIKTLFEKRMLKGDVETLTELLDTPNFQDNNKAINRDYE 308

  Fly   315 NQVADISEMDERVLLSVQG--AIETKGDSPKSPQLAFQTSSSPSHRKLSTH-----DLPASLPLS 372
            ..|..:.:.||||.|....  .|.|...||..|.....::.......|..|     .|..|.||:
Zfish   309 EFVLTVGDFDERVFLGADADEEIGTPRKSPAEPPSGHLSARMQVENNLQQHFEKTRSLAPSTPLT 373

  Fly   373 IIKAFPKKE----------------------------DA-------------DKIVNYLDQTLEE 396
            ..:...:||                            ||             :.|:|.:....|:
Zfish   374 GRRYLKEKEVLVTPVSSATQSVSRLQSMVSGLRNAPSDALLQIFNSCSRNPTESILNRVKTLGEK 438

  Fly   397 MNRTFTMAVKDFLDA--ELSGKRFRQARGLYYKYLQKILGPELVQKPQLKIGQLMKQRKLTAALL 459
            ..:.:|....|...|  :.:.||.:.|..||:|.|:.::..|:.:........|::|..|..:||
Zfish   439 FKQAYTNPTDDLPGAHMDFAEKRLKLAEILYFKILENVMTQEMKRLQGKDWAVLLEQEVLHCSLL 503

  Fly   460 ACCLELALHVHHKLVEGLRFPFVLHCFSLDAYDFQKILELVVRYDHGFLGRELIKHLDVVEEMCL 524
            |||||:.|..:.   ....||::|..|.:..:.|.|::|:.:|.:.| |.|:::|||:.:||..|
Zfish   504 ACCLEVVLFSYS---SQRTFPWILEIFQIPPFYFYKVIEVFIRSEEG-LSRDMVKHLNSIEEQVL 564

  Fly   525 DSLIFRKSSQLWWELNQ---RLPRYKEVDAETEDKENFSTGS----------------------- 563
            :|..:.:.|.||..||:   ::|..:||:..:    ||.||:                       
Zfish   565 ESRAWTRDSALWNALNKDNNKVPTVEEVNFPS----NFDTGNNAGGPTHLPLVALSPIIHPRLRE 625

  Fly   564 ----------------------------------------------------------------- 563
                                                                             
Zfish   626 VRTGLGSSARKDVPQSPISLHDRYSSPAAGSAKRRLFGDDAPPQSPVKRISVTPIKIIPSGMENQ 690

  Fly   564 ----------------------------------------------------------------- 563
                                                                             
Zfish   691 TTTTTVLSMATGNGQQLTIPLPVVKNEAGGITVIQLQASDMNPLTAQVLLTASPSRPALAAPAIS 755

  Fly   564 -----------------SICLRKFYGLANRRLLLLCKSLCLVDSF-PQIWHLAEHSFTLESSRLL 610
                             ::..||.|.||:.||..||..|.:.... .:||...|||. |..:.|:
Zfish   756 SDSQPPPANKPRRTGSLALFFRKVYHLASVRLRDLCLKLDISSELRGKIWTCFEHSL-LHCTDLM 819

  Fly   611 RNRHLDQLLLCAIHLHVRLEKLHLTFSMIIQHYRRQPHFRRSAYREVSL---------------- 659
            ::||||||||||:::..|:.|...||..|::.||.||......||.|.:                
Zfish   820 KDRHLDQLLLCAVYIISRITKEEHTFQDIMKCYRTQPQANSHVYRSVLIKRRPKVQQADENMEVD 884

  Fly   660 -------------GNGQT---------------ADIITFYNSVYVQSMGNYGRHLECAQTRKSLE 696
                         .|.:|               .|:|.|||::||..|.::......:.....:|
Zfish   885 PPADQSNERTDQAANERTDQADRTQTVFESEERGDLIQFYNNIYVSKMRSFAFKYALSTLDNRME 949

  Fly   697 ESQSNVGILTETTSNELSMRANISISSPPPPRVCQSGS--CSSHPPSS----PAASPLSLQSSPN 755
                         :..||...::...:..|.||.|..|  .|.|..||    ..|.......||:
Zfish   950 -------------APPLSPFPSVRSHTLSPRRVSQKHSIFVSPHKNSSSLTPSTAYTYRFTGSPS 1001

  Fly   756 VKRAASSNDLMRE 768
             |..:..|.::|:
Zfish  1002 -KELSDINQMIRQ 1013

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rbf2NP_524372.1 DUF3452 83..210 CDD:288762 32/135 (24%)
RB_A 380..536 CDD:280101 48/198 (24%)
CYCLIN 564..679 CDD:294043 48/159 (30%)
rbl1NP_001124082.1 DUF3452 79..210 CDD:288762 34/141 (24%)
RB_A 386..579 CDD:280101 48/196 (24%)
RB_B 771..932 CDD:280100 48/161 (30%)
Rb_C 951..>1041 CDD:286075 17/64 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580909
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1010
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46367
OrthoDB 1 1.010 - - D113612at2759
OrthoFinder 1 1.000 - - FOG0002362
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13742
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
87.820

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