DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG5213 and cirbp

Sequence 1:NP_650473.1 Gene:CG5213 FlyBaseID:FBgn0038345 Length:251 Species:Drosophila melanogaster
Sequence 2:NP_001017228.1 Gene:cirbp XenbaseID:XB-GENE-492781 Length:166 Species:Xenopus tropicalis

Alignment Length:94 Identity:27/95 (28%)
Similarity:49/95 (52%) Gaps:7/95 (7%)


  Fly   129 LYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAKYGMDRYMI 193
            |:||.|.....|:.:.::|:.||.:.:|.:::.:.:.||||..|:.||...||:.|...|:...:
 Frog     8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSV 72

  Fly   194 EGASRPLTVKFVEREKKGSSSTSSGSQYK 222
            :|  |.:.|     ::.|.||......|:
 Frog    73 DG--RQIRV-----DQAGKSSNDRRGGYR 94

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG5213NP_650473.1 RRM1_Hu_like 41..117 CDD:240821
RRM 128..202 CDD:214636 22/73 (30%)
cirbpNP_001017228.1 RRM <4..>87 CDD:223796 26/86 (30%)
RRM_CIRBP_RBM3 6..85 CDD:240895 24/84 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_KOG0118
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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