DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and parapinopsinb

DIOPT Version :10

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_001428334.1 Gene:parapinopsinb / 368725 ZFINID:ZDB-GENE-030616-134 Length:339 Species:Danio rerio


Alignment Length:338 Identity:90/338 - (26%)
Similarity:146/338 - (43%) Gaps:32/338 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 YQWP----PLEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMM 97
            |..|    ||....|..:..::|:....|:..|..|:.:....|.||.|.|..:||||.:|....
Zfish    15 YDGPGLKVPLPRAGFITLSLLMAVFSITSVVLNATVIVVTLRHKQLRQPLNFALVNLAVADLGTT 79

  Fly    98 FTMFPPVVLNGFYGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIVKGMARKPLTATA 162
            .|...|.|:....|.:|.|...|.|.|...:.||..::.::.|||.:|..|:.:.:......:..
Zfish    80 LTGSVPSVVTNAVGYYITGRIGCVLEGFCVAFFGISALCTVALIAVERLFVVCRPLGSITFQSRH 144

  Fly   163 AVLRLMVVWTICGAWALMPLFGWNRYVPEGNMTACGTDYFAKDWWNRSYIIVYSLWVYLTPLLTI 227
            |...|:..|.....|...||.||..|..||..|:||..:.:::..:.||||.|....:..|...|
Zfish   145 AAGGLLSCWLWSLIWNTPPLLGWGSYQLEGAGTSCGPHWQSRELRDVSYIICYFSVCFAVPFAII 209

  Fly   228 IFSY-WHIMKAVAAHEKAMREQAKKMNVASLRNSEADKSKAIEIKLAKVALTTISLWFFAWTPYT 291
            :.|| |.:.        .:|:.||....|:.|         .|.::|.:.:..:..:..:|.||.
Zfish   210 LVSYSWLLY--------TLRQVAKVGGGAAAR---------AEARVAWMVVMMVLAFLVSWLPYA 257

  Fly   292 IINYAGIFE-SMHLSPLSTICGSVFAKANAVCNPIVYGLSHPKYKQVLREKMPCLACGKDDLTSD 355
            .:....:.: .:.|:.|..:.....||::.|.||::|...:   ||..|..:|.|.||||...|:
Zfish   258 ALALTVVSKPEVQLAVLVKVLPIYMAKSSTVYNPLIYIYMN---KQFQRYAIPFLMCGKDPWPSE 319

  Fly   356 SRTQATAEISESQ 368
            .      ::||.|
Zfish   320 D------DVSEVQ 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 74/291 (25%)
TM helix 1 49..75 CDD:320207 4/25 (16%)
TM helix 2 82..108 CDD:320207 9/25 (36%)
TM helix 3 120..150 CDD:320207 10/29 (34%)
TM helix 4 161..181 CDD:320207 4/19 (21%)
TM helix 5 208..237 CDD:320207 10/29 (34%)
TM helix 6 267..297 CDD:320207 5/29 (17%)
TM helix 7 306..331 CDD:320207 7/24 (29%)
parapinopsinbNP_001428334.1 None

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