Protein Alignment Rh6 and tmtopsa

DIOPT Version :10

• Sequence 1: NP_524368.5
• Gene: Rh6 / 41889
• FlyBaseID: FBgn0019940
• Length: 363
• Species: Drosophila melanogaster
• Sequence 2: NP_001112371.1
• Gene: tmtopsa / 359832
• ZFINID: ZDB-GENE-030716-3
• Length: 387
• Species: Danio rerio
• Alignment Length: 323
• Identity: 89/323 - (27%)
• Similarity: 148/323 - (45%)
• Gaps: 24/323 - (7%)

  Fly    42 LEPMWFGIIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPVVL 106
            |.|....::...:..:||.....|.:|:.:|...|.||:|.|..:||:..||.::.....|....
Zfish    35 LSPTGHILVAVSLGFIGTFGFLNNLLVLVLFGRYKVLRSPINFLLVNICLSDLLVCVLGTPFSFA 99

  Fly   107 NGFYGTWIMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIVKGMARKPLTATAAVLRLMVVW 171
            ....|.|::|...|..||...||.|.||:.|:.:::|:|||.::.............:..:::.|
Zfish   100 ASTQGRWLIGDTGCVWYGFANSLLGIVSLISLAVLSYERYCTMMGSTEADATNYKKVIGGVLMSW 164

  Fly   172 TICGAWALMPLFGWNRYVPEGNMTACGTDYFAKDWWNRSYIIVYSLWVYLTPLLTIIFSYWHIMK 236
            .....|.|.|||||:||.|||..|.|..|:..|...|.||||...::..:.|.|.|||.|..::.
Zfish   165 IYSLIWTLPPLFGWSRYGPEGPGTTCSVDWTTKTANNISYIICLFIFCLIVPFLVIIFCYGKLLH 229

  Fly   237 AVAAHEKAMREQAKKMNVASLRNSEADKSKAIEIKLAKVALTTISLWFFAWTPYTIINYAGIFES 301
            |:        :|...:|.:..|..|.        ::..:.:|.:..:...|.||.|:.....|.:
Zfish   230 AI--------KQVSSVNTSVSRKREH--------RVLLMVITMVVFYLLCWLPYGIMALLATFGA 278

  Fly   302 MHL-SPLSTICGSVFAKANAVCNPIVYGLSHPKYKQVLREKMPCLACGK----DDLTSDSRTQ 359
            ..| :..::|..|:.||::.|.||::|...:.::.:..|   ..|.|.|    ..|.|.|:|:
Zfish   279 PGLVTAEASIVPSILAKSSTVINPVIYIFMNKQFYRCFR---ALLNCDKPQRGSSLKSSSKTK 338

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rh6	NP_524368.5	7tmA_photoreceptors_insect	48..338	CDD:320207	79/290 (27%)
		TM helix 1	49..75	CDD:320207	5/25 (20%)
		TM helix 2	82..108	CDD:320207	6/25 (24%)
		TM helix 3	120..150	CDD:320207	13/29 (45%)
		TM helix 4	161..181	CDD:320207	3/19 (16%)
		TM helix 5	208..237	CDD:320207	11/28 (39%)
		TM helix 6	267..297	CDD:320207	5/29 (17%)
		TM helix 7	306..331	CDD:320207	8/24 (33%)
tmtopsa	NP_001112371.1	7tmA_tmt_opsin	41..316	CDD:320214	79/290 (27%)
		TM helix 1	42..68	CDD:320214	5/25 (20%)
		TM helix 2	75..101	CDD:320214	6/25 (24%)
		TM helix 3	113..143	CDD:320214	13/29 (45%)
		TM helix 4	154..176	CDD:320214	4/21 (19%)
		TM helix 5	201..231	CDD:320214	11/29 (38%)
		TM helix 6	244..274	CDD:320214	6/37 (16%)
		TM helix 7	284..309	CDD:320214	8/24 (33%)