DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh6 and opn4.1

DIOPT Version :10

Sequence 1:NP_524368.5 Gene:Rh6 / 41889 FlyBaseID:FBgn0019940 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_840074.2 Gene:opn4.1 / 352918 ZFINID:ZDB-GENE-030314-2 Length:500 Species:Danio rerio


Alignment Length:308 Identity:113/308 - (36%)
Similarity:166/308 - (53%) Gaps:26/308 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 IIGFVIAILGTMSLAGNFIVMYIFTSSKGLRTPSNMFVVNLAFSDFMMMFTMFPPVVLNGFYGTW 113
            |||.||.|:|...:.||.:|:|:|..|:.|||..|||:||||.:||:|..|..|.......:..|
Zfish    66 IIGSVILIVGITGVIGNALVVYVFCRSRTLRTAGNMFIVNLAVADFLMSVTQSPVFFAASLHRRW 130

  Fly   114 IMGPFLCELYGMFGSLFGCVSIWSMTLIAYDRYCVIVKGMARKPLTATAAVLR------LMVVWT 172
            :.|...||||...|:|||..|:.::|.||.|| |:.:    .:||...:.|.|      |:|||.
Zfish   131 VFGERPCELYAFCGALFGICSMMTLTAIAADR-CLAI----TQPLALVSRVSRRKAGAVLVVVWL 190

  Fly   173 ICGAWALMPLFGWNRYVPEGNMTACGTDYFAKDWWNRSYIIVYSLWVYLTPLLTIIFSYWHIMKA 237
            ....|:|.|.|||:.|||||..|:|..||.......|:|.|:..::|:..||..|...|:.|.:.
Zfish   191 YSLGWSLPPFFGWSAYVPEGLQTSCSWDYMTFTPSVRAYTILLFVFVFFIPLGIIGSCYFAIFQT 255

  Fly   238 VAAHEKAMRE----QAKKMNVASLRNSEADKSKAIEIKLAKVALTTISLWFFAWTPYTIINYAGI 298
            :.|..|.:||    :..|: ...::|         |.|:|||||..|.|:..:|:||:::.....
Zfish   256 IRAAGKEIRELDCGETHKV-YERMQN---------EWKMAKVALVVIVLFIISWSPYSVVALTAT 310

  Fly   299 FESMH-LSPLSTICGSVFAKANAVCNPIVYGLSHPKYKQVLREKMPCL 345
            ....| |:|......:|.|||:|:.|||:|.::||||:..:...:|.|
Zfish   311 AGYSHFLTPYMNSVPAVIAKASAIHNPIIYAITHPKYRVAIARYIPVL 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh6NP_524368.5 7tmA_photoreceptors_insect 48..338 CDD:320207 111/299 (37%)
TM helix 1 49..75 CDD:320207 12/25 (48%)
TM helix 2 82..108 CDD:320207 12/25 (48%)
TM helix 3 120..150 CDD:320207 15/29 (52%)
TM helix 4 161..181 CDD:320207 8/25 (32%)
TM helix 5 208..237 CDD:320207 9/28 (32%)
TM helix 6 267..297 CDD:320207 12/29 (41%)
TM helix 7 306..331 CDD:320207 10/24 (42%)
opn4.1NP_840074.2 7tmA_Melanopsin 65..351 CDD:320458 111/299 (37%)
TM helix 1 66..92 CDD:320458 12/25 (48%)
TM helix 2 99..125 CDD:320458 12/25 (48%)
TM helix 3 137..167 CDD:320458 15/34 (44%)
TM helix 4 179..201 CDD:320458 7/21 (33%)
TM helix 5 226..256 CDD:320458 9/29 (31%)
TM helix 6 279..309 CDD:320458 13/38 (34%)
TM helix 7 319..344 CDD:320458 10/24 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 404..428
Blue background indicates that the domain is not in the aligned region.

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