DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6171 and Aplf

DIOPT Version :10

Sequence 1:NP_001097801.1 Gene:CG6171 / 41872 FlyBaseID:FBgn0026737 Length:255 Species:Drosophila melanogaster
Sequence 2:XP_008761298.1 Gene:Aplf / 500247 RGDID:1565557 Length:510 Species:Rattus norvegicus


Alignment Length:225 Identity:72/225 - (32%)
Similarity:103/225 - (45%) Gaps:39/225 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 VKSEEPVASIKDETNPEVPM-KIKAEPVENADEPTSTTPAIKIKAE-----PADNGNSPAAAMVK 97
            ||:.:...:|..|...|.|. |...:|..|..:.|.:.|..:...:     ....|..|.::...
  Rat   292 VKANKLSDTISAEELGEAPKHKAVTKPTTNDKDKTMSHPKCRAGVQSKTFLEKSQGCHPESSSAP 356

  Fly    98 TEPTNSNAQDA------ADESTVSSSSIRTSCRFGIRCYRRNPAHRSAEAHPGDQDYRRPNFPAP 156
            :.|..|:...|      ::||.|.    ||||.:|..|||:||.|....:||||.||..  .|..
  Rat   357 SSPGASHTDTADSVLGCSEESKVR----RTSCMYGANCYRKNPLHFQHFSHPGDSDYGA--VPVT 415

  Fly   157 PLGT----PACPFGNACYRRNPVHFQDYSHPADFNSAQNIRNRLRQRRAQRQNDDDSG----TDE 213
            ..|.    |.||:|.:|||:||.|..:|.|.|           |..|.|..::|||.|    :|:
  Rat   416 DEGVTGDRPECPYGASCYRKNPQHRMEYRHSA-----------LPARVAVDEDDDDVGQPSDSDK 469

  Fly   214 EDEPFGGDNDRDADYRPGADINEDED-DEL 242
            ::|.: ...|.|:|::||.|..|.|| |||
  Rat   470 DEEDY-APTDEDSDWQPGKDDEEKEDVDEL 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6171NP_001097801.1 zf-CCHH 120..144 CDD:463043 12/23 (52%)
zf-CCHH 161..183 CDD:463043 11/21 (52%)
AplfXP_008761298.1 FHA_APLF 5..100 CDD:438769
zf-CCHH 381..405 CDD:463043 12/23 (52%)
zf-CCHH 423..445 CDD:463043 11/21 (52%)
Blue background indicates that the domain is not in the aligned region.

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