DRSC/TRiP Functional Genomics Resources

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Protein Alignment Atg4b and Atg4b

DIOPT Version :10

Sequence 1:NP_650452.1 Gene:Atg4b / 41868 FlyBaseID:FBgn0038325 Length:668 Species:Drosophila melanogaster
Sequence 2:NP_001386126.1 Gene:Atg4b / 316640 RGDID:1309664 Length:393 Species:Rattus norvegicus


Alignment Length:403 Identity:125/403 - (31%)
Similarity:185/403 - (45%) Gaps:98/403 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 QPVWLLGRCYHRRFTPPVSMESSITELPSGADTTPDNATSAFDSIQATSTSTSLYPALNPQQIDE 238
            :|||:|||.|           |..||.                                    ||
  Rat    24 EPVWILGRKY-----------SIFTEK------------------------------------DE 41

  Fly   239 IVVPQELGMDAVENQVGEQPWEEGIEGFRRDFYSRIWMTYRREFPIMNGSNYTSDCGWGCMLRSG 303
            |:                           .|..||:|.||||.||.:.|:..|||.|||||||.|
  Rat    42 IL---------------------------SDVASRLWFTYRRNFPAIGGTGPTSDTGWGCMLRCG 79

  Fly   304 QMLFAQGLICHFLGRSWRYDSESQLHSTYEDNMHKKIVKWFGDSSSKSSPFSIHALVRLGEHLGK 368
            ||:|||.|:|..|||.||:....:...:|     ..::..|.|  .|.|.:|||.:.::|...||
  Rat    80 QMIFAQALVCRHLGRDWRWTQRKRQPDSY-----FSVLNAFLD--RKDSYYSIHQIAQMGVGEGK 137

  Fly   369 KPGDWYGPASVSYLLKHALEHAAQENADFD---NISVYVAKDCTIYLQDIEDQCSIPEPAPKPHV 430
            ..|.||||.:|:.:||        :.|.||   :::|::|.|.|:.:::|...|....|......
  Rat   138 SIGQWYGPNTVAQVLK--------KLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRASLPCAGAAA 194

  Fly   431 PWQQAKRP----QAETTKTEQQQHWKSLIVLIPLRLGSDKLNPVYAHCLKLLLSTEHCLGILGGK 491
            ...:::|.    .|....|.:...|:.|::|||||||...:|..|...||........||::|||
  Rat   195 LSMESERHCNGLPAGAEVTNRPLAWRPLVLLIPLRLGLTDINEAYVETLKHCFMMPQSLGVIGGK 259

  Fly   492 PKHSLYFVGFQEDRLIHLDPHYCQEMVDVNQENF-SLHSFHCKSPR-KLKASKMDPSCCIGFYCA 554
            |..:.||:|:..:.||:||||..|..|::....| ...||||:.|. ::...::|||..:||:|.
  Rat   260 PNSAHYFIGYVGEELIYLDPHTTQPAVELTDSCFIPDESFHCQHPPCRMGIGELDPSIAVGFFCK 324

  Fly   555 TKSDFDNFMESVQ 567
            |:.||:::.:.|:
  Rat   325 TEEDFNDWCQQVK 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Atg4bNP_650452.1 Peptidase_C54 263..565 CDD:460915 111/310 (36%)
Atg4bNP_001386126.1 Peptidase_C54 39..335 CDD:460915 85/302 (28%)
ATG4_LIR 363..391 CDD:466317 8/29 (28%)
LIR. /evidence=ECO:0000250|UniProtKB:Q9Y4P1 388..391 0/2 (0%)
Blue background indicates that the domain is not in the aligned region.

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