DRSC/TRiP Functional Genomics Resources

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Protein Alignment su(Hw) and AT3G29340

DIOPT Version :10

Sequence 1:NP_524349.1 Gene:su(Hw) / 41740 FlyBaseID:FBgn0003567 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_189580.1 Gene:AT3G29340 / 822592 AraportID:AT3G29340 Length:650 Species:Arabidopsis thaliana


Alignment Length:489 Identity:107/489 - (21%)
Similarity:147/489 - (30%) Gaps:203/489 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 SDFPCSICNANLRSEALLALHEEQHKSRGKPYACKICGKDFTRSYH-----LKRHQKYSSCSSNE 376
            |...|.||..:......|..|:..|    :|...|:..::|:..|.     .||.:..|||    
plant    41 SSHKCKICGKSFECYQALGGHQRIH----RPIKEKLSKQEFSEVYPRKSKLQKRPESSSSC---- 97

  Fly   377 TDTMSCKVCDRVFYRLDNLRSHLKQHLGT--------------------QVVKKPEYM------- 414
               ..||||.::|.....|..|.|.|..|                    ::|.:|...       
plant    98 ---YECKVCGKIFGCYRGLGGHTKLHRSTKRELASTQDENSLLDSSEAKKIVSQPSSFKVSQEEK 159

  Fly   415 ---CHTCKNCFYS--------LSTLNIHIRTHTGEK-PFDCDLCDKKFSALVALKKHRRYH---T 464
               |...|..|..        .|||...::|.|..| ...|.:|.|.|.....|..|:|.|   :
plant   160 FLHCVELKQDFSEPLSHSGALPSTLRSKLQTKTQWKSSCHCKICGKSFVCSQGLGNHKRVHREIS 224

  Fly   465 G-------------------------EKPYSCTV------------------------------C 474
            |                         :||.|..|                              |
plant   225 GKLACKRKYTEDYNPFSDSLKAKKIVKKPSSFEVSQEEKILHCVELKQDFGELLAHSGFDKSISC 289

  Fly   475 NQAFAVKEVLNRHMKRH---------TGE---RPHKCDECGKSF-----IQATQLRTHSKTHIRP 522
            :::..||:|..::.|..         .||   |.|.|..||:.|     :...| |.||..|   
plant   290 SKSIKVKKVARKNEKTEDSTSLFGVFVGEMSQRLHGCKTCGRKFGTLKGVYGHQ-RMHSGNH--- 350

  Fly   523 FPCEQCDEKFKTEKQLER-----------HVKTHSRTKRPVFSCAECKRNFRTPALLK------- 569
                   .:.:.|..|||           .|....|.|...| .||.:::....|.|.       
plant   351 -------NRIEDENGLERIWGLKKKSRVCSVSAFDRFKGSSF-MAEIEKHEVIEAALNLVMLCQG 407

  Fly   570 --------------EHMD-EGKHSP---KQQRSSMRSAVKIMERTDCAICDKNFDSSDTLRRHIR 616
                          ..|| |.|..|   |.|:.| ||:.|      |:||:|:|..|..|..|.|
plant   408 VYDFASISNLPLGDGFMDLELKPCPLRRKLQKKS-RSSYK------CSICEKSFVCSQALGSHQR 465

  Fly   617 TVHECDPDDIFGVEPHP-----------SKRAKK 639
             :|.      :.:.|.|           |..|||
plant   466 -LHR------WKLVPKPEYIEDDSSLLDSSEAKK 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(Hw)NP_524349.1 C2H2 Zn finger 292..313 CDD:275368
COG5048 <312..517 CDD:227381 66/318 (21%)
C2H2 Zn finger 321..341 CDD:275368 5/19 (26%)
C2H2 Zn finger 350..368 CDD:275368 5/22 (23%)
C2H2 Zn finger 382..402 CDD:275368 8/19 (42%)
C2H2 Zn finger 415..435 CDD:275368 6/27 (22%)
C2H2 Zn finger 443..463 CDD:275368 7/19 (37%)
COG5048 <467..620 CDD:227381 54/235 (23%)
C2H2 Zn finger 471..491 CDD:275368 6/49 (12%)
C2H2 Zn finger 499..519 CDD:275368 8/24 (33%)
C2H2 Zn finger 525..545 CDD:275368 5/30 (17%)
C2H2 Zn finger 555..572 CDD:275368 4/37 (11%)
C2H2 Zn finger 598..615 CDD:275371 7/16 (44%)
AT3G29340NP_189580.1 zf-C2H2_6 43..68 CDD:433576 6/28 (21%)
C2H2 Zn finger 45..65 CDD:275368 5/19 (26%)
zf-C2H2_6 98..122 CDD:433576 9/23 (39%)
C2H2 Zn finger 100..120 CDD:275368 8/19 (42%)
Blue background indicates that the domain is not in the aligned region.

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