DRSC/TRiP Functional Genomics Resources

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Protein Alignment Abi and POSH

DIOPT Version :10

Sequence 1:NP_001247091.1 Gene:Abi / 41718 FlyBaseID:FBgn0020510 Length:477 Species:Drosophila melanogaster
Sequence 2:NP_523776.1 Gene:POSH / 36990 FlyBaseID:FBgn0040294 Length:838 Species:Drosophila melanogaster


Alignment Length:449 Identity:91/449 - (20%)
Similarity:157/449 - (34%) Gaps:144/449 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 QLLELQAQQLGEMESQMNHIAQTVHIHKE----------------------KVARREIGVLTANK 128
            |||:||:.|.....::          ||:                      |..:.:: :|..::
  Fly   114 QLLQLQSHQQSHQPAR----------HKQRRFLLPHAYALFDFASGEATDLKFKKGDL-ILIKHR 167

  Fly   129 VSSRQFKIVAPINPEK---PIKYVRKPI-----------DYSMLDEIGHGINSAQHSQVRQKHRG 179
            :.:..|  |...|.::   ||.||:..:           |:.|......|....:.|.|.|..|.
  Fly   168 IDNNWF--VGQANGQEGTFPINYVKVSVPLPMPQCIAMYDFKMGPNDEEGCLEFKKSTVIQVMRR 230

  Fly   180 SSHGSVQSLLPPSVGPPPTTKPPTPPQMSRAGNTGTLGKSVSNTGTLGKSSREYRTPPVVNPPQV 244
            ..|...:..:..::|    ..|....:::.|      .|.:.::|        ..|.|..:||:.
  Fly   231 VDHNWAEGRIGQTIG----IFPIAFVELNAA------AKKLLDSG--------LHTHPFCHPPKQ 277

  Fly   245 PSHYA-PNYPIGHPKRMSTASSTMTTTTTGGGAAGNERAAGYSALPMPPSQQIATHVNLPSAGMM 308
            ....| |..|:..|..::.:||..:.:|.|...:.:..::...:    |:.||            
  Fly   278 QGQRALPPVPVIDPTVVTESSSGSSNSTPGSSNSSSTSSSNNCS----PNHQI------------ 326

  Fly   309 QSLPPPP---------PTTYDDRSSMPP-----------APPSPLTVSQHEMTEQSHIGMHTLGR 353
             |||..|         ...:.|:.:...           ||.|.|..::|.....|.  .|.|.|
  Fly   327 -SLPNTPQHVVASGSASVRFRDKGAKEKRHSLNALLGGGAPLSLLQTNRHSAEILSL--PHELSR 388

  Fly   354 NINRNPNRNHFSLNFARPGSQSPPLPPPPPPEDEHQDFGRPRTSTGPQLAPIVPEDQNLPGWVPK 418
                            ...|.|..|.|...|:....    .:|:...|:.|      ||| |   
  Fly   389 ----------------LEVSSSTALKPTSAPQTSRV----LKTTVQQQMQP------NLP-W--- 423

  Fly   419 NFIEKVVAIYDYYADKDDELSFQESSVLYVLKKNDDGWWEGV--MDGVTGLFPGNYVEP 475
                ..:|::.|...:.|||..::..|..|.::..|||::|.  :| :||:|||||:.|
  Fly   424 ----GYLALFPYKPRQTDELELKKGCVYIVTERCVDGWFKGKNWLD-ITGVFPGNYLTP 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AbiNP_001247091.1 Abi_HHR 105..168 CDD:462279 14/98 (14%)
SH3_Abi 423..474 CDD:212760 19/52 (37%)
POSHNP_523776.1 RAD18 6..>113 CDD:227719
RING-HC_SH3RF3 8..53 CDD:438408
SH3 139..191 CDD:473055 9/54 (17%)
SH3_SH3RF_2 199..251 CDD:212721 10/55 (18%)
SH3_SH3RF_3 424..477 CDD:212717 19/53 (36%)
SH3_SH3RF_C 782..836 CDD:212719
Blue background indicates that the domain is not in the aligned region.

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